Strain Fitness in Shewanella oneidensis MR-1 around SO0360

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspoT and rpoZ are separated by 43 nucleotidesrpoZ and gmk are separated by 58 nucleotides SO0359: spoT - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file), at 368,255 to 370,360 spoT SO0360: rpoZ - DNA-directed RNA polymerase, omega subunit (NCBI ptt file), at 370,404 to 370,682 rpoZ SO0361: gmk - guanylate kinase (NCBI ptt file), at 370,741 to 371,364 gmk Position (kb) 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 370.409 kb on - strandat 370.436 kb on - strand, within rpoZat 370.451 kb on - strand, within rpoZat 370.479 kb on - strand, within rpoZat 370.479 kb on - strand, within rpoZat 370.549 kb on - strand, within rpoZat 370.669 kb on - strandat 370.791 kb on - strandat 370.791 kb on - strandat 371.535 kb on - strandat 371.535 kb on - strandat 371.558 kb on + strandat 371.558 kb on + strandat 371.558 kb on + strandat 371.558 kb on + strandat 371.558 kb on + strandat 371.558 kb on + strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strandat 371.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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370,409 - -1.2
370,436 - rpoZ SO0360 0.11 -3.6
370,451 - rpoZ SO0360 0.17 -3.1
370,479 - rpoZ SO0360 0.27 -1.4
370,479 - rpoZ SO0360 0.27 -1.9
370,549 - rpoZ SO0360 0.52 -1.0
370,669 - -2.1
370,791 - -1.5
370,791 - -4.3
371,535 - +3.4
371,535 - -0.2
371,558 + +1.2
371,558 + +0.3
371,558 + -0.6
371,558 + -0.0
371,558 + +1.2
371,558 + -1.8
371,566 - -0.1
371,566 - +0.0
371,566 - +0.1
371,566 - +1.5
371,566 - -2.4
371,566 - -0.5

Or see this region's nucleotide sequence