Strain Fitness in Shewanella oneidensis MR-1 around SO0341

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntilvE and SO0341 are separated by 40 nucleotidesSO0341 and SO0342 are separated by 256 nucleotides SO0340: ilvE - branched-chain amino acid aminotransferase (NCBI ptt file), at 340,328 to 341,419 ilvE SO0341: SO0341 - sensory box protein (NCBI ptt file), at 341,460 to 346,007 SO0341 SO0342: SO0342 - conserved hypothetical protein (NCBI ptt file), at 346,264 to 347,457 SO0342 Position (kb) 341 342 343 344 345 346 347Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 340.519 kb on + strand, within ilvEat 340.732 kb on - strand, within ilvEat 340.774 kb on + strand, within ilvEat 340.808 kb on - strand, within ilvEat 340.905 kb on + strand, within ilvEat 340.970 kb on - strand, within ilvEat 340.972 kb on + strand, within ilvEat 341.026 kb on + strand, within ilvEat 341.044 kb on - strand, within ilvEat 341.341 kb on + strandat 341.455 kb on - strandat 341.455 kb on - strandat 341.555 kb on - strandat 341.573 kb on + strandat 341.573 kb on - strandat 341.576 kb on - strandat 341.591 kb on - strandat 341.669 kb on - strandat 341.669 kb on - strandat 341.793 kb on + strandat 341.884 kb on - strandat 341.906 kb on - strandat 341.949 kb on - strand, within SO0341at 342.105 kb on - strand, within SO0341at 342.140 kb on + strand, within SO0341at 342.188 kb on + strand, within SO0341at 342.380 kb on + strand, within SO0341at 342.380 kb on + strand, within SO0341at 342.380 kb on + strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.388 kb on - strand, within SO0341at 342.445 kb on + strand, within SO0341at 342.486 kb on - strand, within SO0341at 342.538 kb on + strand, within SO0341at 342.583 kb on + strand, within SO0341at 342.591 kb on - strand, within SO0341at 342.621 kb on - strand, within SO0341at 342.704 kb on + strand, within SO0341at 342.709 kb on + strand, within SO0341at 342.712 kb on - strand, within SO0341at 342.722 kb on - strand, within SO0341at 342.738 kb on - strand, within SO0341at 342.750 kb on - strand, within SO0341at 342.884 kb on - strand, within SO0341at 342.950 kb on + strand, within SO0341at 343.025 kb on - strand, within SO0341at 343.080 kb on + strand, within SO0341at 343.088 kb on - strand, within SO0341at 343.088 kb on - strand, within SO0341at 343.088 kb on - strand, within SO0341at 343.095 kb on + strand, within SO0341at 343.116 kb on + strand, within SO0341at 343.116 kb on + strand, within SO0341at 343.124 kb on + strand, within SO0341at 343.306 kb on - strand, within SO0341at 343.351 kb on + strand, within SO0341at 343.359 kb on - strand, within SO0341at 343.369 kb on - strand, within SO0341at 343.387 kb on - strand, within SO0341at 343.487 kb on + strand, within SO0341at 343.507 kb on - strand, within SO0341at 343.560 kb on + strand, within SO0341at 343.576 kb on + strand, within SO0341at 343.619 kb on - strand, within SO0341at 343.672 kb on + strand, within SO0341at 343.680 kb on + strand, within SO0341at 343.680 kb on + strand, within SO0341at 343.680 kb on + strand, within SO0341at 343.688 kb on + strand, within SO0341at 343.824 kb on + strand, within SO0341at 343.844 kb on + strand, within SO0341at 343.867 kb on + strand, within SO0341at 343.910 kb on - strand, within SO0341at 343.983 kb on - strand, within SO0341at 344.013 kb on - strand, within SO0341at 344.014 kb on - strand, within SO0341at 344.056 kb on - strand, within SO0341at 344.059 kb on + strand, within SO0341at 344.176 kb on + strand, within SO0341at 344.184 kb on - strand, within SO0341at 344.184 kb on - strand, within SO0341at 344.184 kb on - strand, within SO0341at 344.200 kb on + strand, within SO0341at 344.230 kb on - strand, within SO0341at 344.250 kb on + strand, within SO0341at 344.258 kb on - strand, within SO0341at 344.480 kb on - strand, within SO0341at 344.510 kb on + strand, within SO0341at 344.623 kb on + strand, within SO0341at 344.647 kb on + strand, within SO0341at 344.647 kb on + strand, within SO0341at 344.650 kb on - strand, within SO0341at 344.678 kb on - strand, within SO0341at 344.693 kb on - strand, within SO0341at 344.769 kb on + strand, within SO0341at 344.775 kb on + strand, within SO0341at 344.775 kb on + strand, within SO0341at 344.783 kb on - strand, within SO0341at 344.783 kb on - strand, within SO0341at 344.831 kb on - strand, within SO0341at 344.843 kb on + strand, within SO0341at 344.848 kb on + strand, within SO0341at 344.871 kb on + strand, within SO0341at 344.896 kb on + strand, within SO0341at 344.903 kb on + strand, within SO0341at 344.976 kb on - strand, within SO0341at 344.993 kb on + strand, within SO0341at 345.004 kb on + strand, within SO0341at 345.012 kb on - strand, within SO0341at 345.012 kb on - strand, within SO0341at 345.043 kb on - strand, within SO0341at 345.044 kb on - strand, within SO0341at 345.112 kb on + strand, within SO0341at 345.137 kb on - strand, within SO0341at 345.137 kb on - strand, within SO0341at 345.148 kb on - strand, within SO0341at 345.167 kb on - strand, within SO0341at 345.304 kb on + strand, within SO0341at 345.312 kb on - strand, within SO0341at 345.337 kb on + strand, within SO0341at 345.337 kb on + strand, within SO0341at 345.376 kb on - strand, within SO0341at 345.387 kb on - strand, within SO0341at 345.584 kb on - strandat 345.596 kb on + strandat 345.657 kb on + strandat 345.727 kb on - strandat 345.762 kb on + strandat 345.805 kb on - strandat 345.805 kb on - strandat 345.805 kb on - strandat 345.870 kb on + strandat 345.911 kb on - strandat 345.911 kb on - strandat 345.913 kb on + strandat 345.913 kb on + strandat 345.921 kb on - strandat 345.950 kb on + strandat 345.958 kb on - strandat 345.978 kb on + strandat 345.978 kb on + strandat 345.978 kb on + strandat 345.986 kb on - strandat 345.986 kb on - strandat 345.986 kb on - strandat 345.991 kb on - strandat 346.049 kb on + strandat 346.100 kb on + strandat 346.134 kb on + strandat 346.190 kb on - strandat 346.192 kb on + strandat 346.230 kb on + strandat 346.261 kb on + strandat 346.261 kb on + strandat 346.268 kb on + strandat 346.277 kb on - strandat 346.325 kb on + strandat 346.333 kb on - strandat 346.403 kb on - strand, within SO0342at 346.670 kb on - strand, within SO0342at 346.670 kb on - strand, within SO0342at 346.702 kb on - strand, within SO0342at 346.710 kb on + strand, within SO0342at 346.743 kb on + strand, within SO0342at 346.743 kb on + strand, within SO0342at 346.743 kb on + strand, within SO0342at 346.751 kb on - strand, within SO0342at 346.935 kb on - strand, within SO0342

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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340,519 + ilvE SO0340 0.17 -1.9
340,732 - ilvE SO0340 0.37 -1.7
340,774 + ilvE SO0340 0.41 -1.9
340,808 - ilvE SO0340 0.44 -0.9
340,905 + ilvE SO0340 0.53 -0.9
340,970 - ilvE SO0340 0.59 -2.3
340,972 + ilvE SO0340 0.59 -1.9
341,026 + ilvE SO0340 0.64 -2.5
341,044 - ilvE SO0340 0.66 -1.5
341,341 + -1.3
341,455 - -0.4
341,455 - +0.0
341,555 - +0.8
341,573 + +1.2
341,573 - -0.7
341,576 - +0.3
341,591 - +0.1
341,669 - +0.1
341,669 - +0.4
341,793 + +0.6
341,884 - +0.1
341,906 - +0.5
341,949 - SO0341 0.11 +1.4
342,105 - SO0341 0.14 -0.2
342,140 + SO0341 0.15 +0.3
342,188 + SO0341 0.16 +1.2
342,380 + SO0341 0.20 +1.0
342,380 + SO0341 0.20 +0.7
342,380 + SO0341 0.20 +1.4
342,388 - SO0341 0.20 +0.5
342,388 - SO0341 0.20 +0.2
342,388 - SO0341 0.20 -0.2
342,388 - SO0341 0.20 -1.5
342,388 - SO0341 0.20 +0.6
342,388 - SO0341 0.20 +0.7
342,388 - SO0341 0.20 +0.6
342,388 - SO0341 0.20 -0.8
342,445 + SO0341 0.22 -0.3
342,486 - SO0341 0.23 +0.5
342,538 + SO0341 0.24 -0.4
342,583 + SO0341 0.25 +0.4
342,591 - SO0341 0.25 +1.0
342,621 - SO0341 0.26 +0.7
342,704 + SO0341 0.27 +0.0
342,709 + SO0341 0.27 +0.8
342,712 - SO0341 0.28 +0.1
342,722 - SO0341 0.28 +0.4
342,738 - SO0341 0.28 +0.5
342,750 - SO0341 0.28 -0.6
342,884 - SO0341 0.31 +0.9
342,950 + SO0341 0.33 +0.2
343,025 - SO0341 0.34 +0.9
343,080 + SO0341 0.36 +1.4
343,088 - SO0341 0.36 +0.1
343,088 - SO0341 0.36 +0.6
343,088 - SO0341 0.36 +0.3
343,095 + SO0341 0.36 +0.4
343,116 + SO0341 0.36 +0.1
343,116 + SO0341 0.36 +0.1
343,124 + SO0341 0.37 +0.8
343,306 - SO0341 0.41 +0.3
343,351 + SO0341 0.42 +0.0
343,359 - SO0341 0.42 +0.4
343,369 - SO0341 0.42 +0.5
343,387 - SO0341 0.42 +0.3
343,487 + SO0341 0.45 +1.5
343,507 - SO0341 0.45 -0.4
343,560 + SO0341 0.46 +0.4
343,576 + SO0341 0.47 +0.7
343,619 - SO0341 0.47 +0.1
343,672 + SO0341 0.49 +0.7
343,680 + SO0341 0.49 +0.8
343,680 + SO0341 0.49 +0.7
343,680 + SO0341 0.49 +0.4
343,688 + SO0341 0.49 -0.2
343,824 + SO0341 0.52 +1.1
343,844 + SO0341 0.52 +0.4
343,867 + SO0341 0.53 +1.0
343,910 - SO0341 0.54 +0.8
343,983 - SO0341 0.55 +0.7
344,013 - SO0341 0.56 +0.7
344,014 - SO0341 0.56 +0.1
344,056 - SO0341 0.57 +0.8
344,059 + SO0341 0.57 +0.7
344,176 + SO0341 0.60 +1.9
344,184 - SO0341 0.60 +1.5
344,184 - SO0341 0.60 +0.5
344,184 - SO0341 0.60 -0.1
344,200 + SO0341 0.60 -0.5
344,230 - SO0341 0.61 +0.4
344,250 + SO0341 0.61 +0.4
344,258 - SO0341 0.62 +1.6
344,480 - SO0341 0.66 +0.4
344,510 + SO0341 0.67 -0.1
344,623 + SO0341 0.70 +0.6
344,647 + SO0341 0.70 +0.4
344,647 + SO0341 0.70 +0.1
344,650 - SO0341 0.70 +0.3
344,678 - SO0341 0.71 -0.2
344,693 - SO0341 0.71 +0.6
344,769 + SO0341 0.73 +0.7
344,775 + SO0341 0.73 +0.2
344,775 + SO0341 0.73 +0.5
344,783 - SO0341 0.73 +0.8
344,783 - SO0341 0.73 +0.3
344,831 - SO0341 0.74 +0.2
344,843 + SO0341 0.74 -0.4
344,848 + SO0341 0.74 -0.1
344,871 + SO0341 0.75 +1.2
344,896 + SO0341 0.76 +0.5
344,903 + SO0341 0.76 +0.3
344,976 - SO0341 0.77 +0.5
344,993 + SO0341 0.78 +0.2
345,004 + SO0341 0.78 +0.6
345,012 - SO0341 0.78 +1.1
345,012 - SO0341 0.78 +0.7
345,043 - SO0341 0.79 +0.9
345,044 - SO0341 0.79 +1.0
345,112 + SO0341 0.80 +0.4
345,137 - SO0341 0.81 +1.3
345,137 - SO0341 0.81 +0.2
345,148 - SO0341 0.81 -0.1
345,167 - SO0341 0.82 +0.9
345,304 + SO0341 0.85 +0.5
345,312 - SO0341 0.85 +0.3
345,337 + SO0341 0.85 +0.0
345,337 + SO0341 0.85 +1.2
345,376 - SO0341 0.86 +0.4
345,387 - SO0341 0.86 +2.1
345,584 - -0.7
345,596 + +0.2
345,657 + +0.0
345,727 - +0.7
345,762 + +0.5
345,805 - -0.0
345,805 - +0.1
345,805 - +0.5
345,870 + +0.2
345,911 - +0.3
345,911 - +0.6
345,913 + +0.2
345,913 + +0.6
345,921 - -0.2
345,950 + +0.8
345,958 - +0.1
345,978 + +1.3
345,978 + -0.6
345,978 + +0.4
345,986 - +0.5
345,986 - +0.7
345,986 - +0.4
345,991 - -0.2
346,049 + +0.6
346,100 + -0.4
346,134 + +0.0
346,190 - +0.0
346,192 + +0.2
346,230 + +0.3
346,261 + +1.3
346,261 + +0.6
346,268 + +0.7
346,277 - +1.4
346,325 + -2.3
346,333 - -3.3
346,403 - SO0342 0.12 -2.3
346,670 - SO0342 0.34 -1.7
346,670 - SO0342 0.34 -2.3
346,702 - SO0342 0.37 -2.4
346,710 + SO0342 0.37 -5.1
346,743 + SO0342 0.40 -2.2
346,743 + SO0342 0.40 -4.3
346,743 + SO0342 0.40 -2.9
346,751 - SO0342 0.41 -5.4
346,935 - SO0342 0.56 -2.5

Or see this region's nucleotide sequence