Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbE and ccmH overlap by 4 nucleotides ccmH and SO0269 overlap by 4 nucleotides SO0269 and Sp16SA are separated by 540 nucleotides
SO0267: dsbE - thiol:disulfide interchange protein DsbE (NCBI ptt file), at 267,662 to 268,216
dsbE
SO0268: ccmH - cytochrome c-type biogenesis protein CcmH (NCBI ptt file), at 268,213 to 268,692
ccmH
SO0269: SO0269 - thioredoxin, putative (NCBI ptt file), at 268,689 to 269,273
SO0269
SO_r007: Sp16SA - 16S ribosomal RNA (RefSeq), at 269,814 to 271,342
Sp16SA
Position (kb) 268
269
270 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 267.959 kb on - strand, within dsbE at 267.959 kb on - strand, within dsbE at 268.050 kb on + strand, within dsbE at 268.058 kb on - strand, within dsbE at 268.122 kb on + strand, within dsbE at 268.158 kb on + strand, within dsbE at 268.159 kb on + strand, within dsbE at 268.206 kb on + strand at 268.246 kb on + strand at 268.278 kb on + strand, within ccmH at 268.285 kb on + strand, within ccmH at 268.286 kb on - strand, within ccmH at 268.400 kb on - strand, within ccmH at 268.426 kb on + strand, within ccmH at 268.428 kb on + strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.560 kb on - strand, within ccmH at 268.582 kb on - strand, within ccmH at 268.608 kb on + strand, within ccmH at 268.832 kb on - strand, within SO0269 at 268.862 kb on + strand, within SO0269 at 268.870 kb on - strand, within SO0269 at 268.890 kb on - strand, within SO0269 at 268.945 kb on + strand, within SO0269 at 268.953 kb on - strand, within SO0269 at 268.953 kb on - strand, within SO0269 at 268.985 kb on + strand, within SO0269 at 268.993 kb on - strand, within SO0269 at 269.110 kb on + strand, within SO0269 at 269.118 kb on - strand, within SO0269 at 269.231 kb on + strand at 269.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 267,959 - dsbE SO0267 0.54 -1.0 267,959 - dsbE SO0267 0.54 -3.0 268,050 + dsbE SO0267 0.70 -4.6 268,058 - dsbE SO0267 0.71 -2.7 268,122 + dsbE SO0267 0.83 -1.7 268,158 + dsbE SO0267 0.89 -1.9 268,159 + dsbE SO0267 0.90 -2.3 268,206 + +0.8 268,246 + -0.9 268,278 + ccmH SO0268 0.14 -1.8 268,285 + ccmH SO0268 0.15 -2.5 268,286 - ccmH SO0268 0.15 -2.2 268,400 - ccmH SO0268 0.39 -0.9 268,426 + ccmH SO0268 0.44 -2.0 268,428 + ccmH SO0268 0.45 -0.9 268,436 - ccmH SO0268 0.46 -2.7 268,436 - ccmH SO0268 0.46 -0.8 268,436 - ccmH SO0268 0.46 -1.8 268,446 + ccmH SO0268 0.49 -2.7 268,446 + ccmH SO0268 0.49 -3.3 268,446 + ccmH SO0268 0.49 -3.1 268,446 + ccmH SO0268 0.49 -0.9 268,446 + ccmH SO0268 0.49 -2.6 268,446 + ccmH SO0268 0.49 -2.3 268,446 + ccmH SO0268 0.49 +0.7 268,454 - ccmH SO0268 0.50 -1.0 268,454 - ccmH SO0268 0.50 -2.2 268,560 - ccmH SO0268 0.72 -1.3 268,582 - ccmH SO0268 0.77 -4.0 268,608 + ccmH SO0268 0.82 -0.9 268,832 - SO0269 0.24 +0.0 268,862 + SO0269 0.30 +0.3 268,870 - SO0269 0.31 +0.7 268,890 - SO0269 0.34 +0.8 268,945 + SO0269 0.44 +1.4 268,953 - SO0269 0.45 +0.9 268,953 - SO0269 0.45 +1.4 268,985 + SO0269 0.51 +0.7 268,993 - SO0269 0.52 +0.4 269,110 + SO0269 0.72 +0.6 269,118 - SO0269 0.73 -0.1 269,231 + -0.7 269,246 + +0.4
Or see this region's nucleotide sequence