Strain Fitness in Shewanella oneidensis MR-1 around SO_4181

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4180 and SO_4181 are separated by 282 nucleotidesSO_4181 and SO4182 are separated by 52 nucleotidesSO4182 and SO4183 are separated by 29 nucleotides SO4180: SO4180 - hypothetical protein (NCBI ptt file), at 4,352,368 to 4,353,756 SO4180 SO_4181: SO_4181 - no description, at 4,354,039 to 4,354,956 _4181 SO4182: SO4182 - ATP-dependent protease La (LON) domain protein, putative (NCBI ptt file), at 4,355,009 to 4,355,584 SO4182 SO4183: SO4183 - ISSod1, transposase OrfB (NCBI ptt file), at 4,355,614 to 4,356,423 SO4183 Position (kb) 4354 4355Strain fitness (log2 ratio) -1 0 1 2at 4353.040 kb on + strand, within SO4180at 4353.040 kb on + strand, within SO4180at 4353.040 kb on + strand, within SO4180at 4353.040 kb on + strand, within SO4180at 4353.040 kb on + strand, within SO4180at 4353.047 kb on - strand, within SO4180at 4353.048 kb on - strand, within SO4180at 4353.048 kb on - strand, within SO4180at 4353.048 kb on - strand, within SO4180at 4353.098 kb on - strand, within SO4180at 4353.098 kb on - strand, within SO4180at 4353.098 kb on - strand, within SO4180at 4353.122 kb on + strand, within SO4180at 4353.122 kb on + strand, within SO4180at 4353.122 kb on + strand, within SO4180at 4353.122 kb on + strand, within SO4180at 4353.122 kb on + strand, within SO4180at 4353.141 kb on - strand, within SO4180at 4353.146 kb on - strand, within SO4180at 4353.178 kb on - strand, within SO4180at 4353.289 kb on + strand, within SO4180at 4353.305 kb on + strand, within SO4180at 4353.313 kb on - strand, within SO4180at 4353.313 kb on - strand, within SO4180at 4353.367 kb on + strand, within SO4180at 4353.388 kb on + strand, within SO4180at 4353.414 kb on - strand, within SO4180at 4353.462 kb on - strand, within SO4180at 4353.462 kb on - strand, within SO4180at 4353.560 kb on + strand, within SO4180at 4353.566 kb on + strand, within SO4180at 4353.568 kb on + strand, within SO4180at 4353.568 kb on - strand, within SO4180at 4353.568 kb on - strand, within SO4180at 4353.568 kb on - strand, within SO4180at 4353.568 kb on - strand, within SO4180at 4353.574 kb on - strand, within SO4180at 4353.574 kb on - strand, within SO4180at 4353.606 kb on + strand, within SO4180at 4353.606 kb on + strand, within SO4180at 4353.614 kb on - strand, within SO4180at 4353.614 kb on - strand, within SO4180at 4353.619 kb on + strandat 4353.619 kb on + strandat 4353.619 kb on + strandat 4353.619 kb on + strandat 4353.619 kb on + strandat 4353.627 kb on - strandat 4353.627 kb on - strandat 4353.644 kb on + strandat 4353.652 kb on - strandat 4353.653 kb on - strandat 4353.676 kb on - strandat 4353.686 kb on - strandat 4353.686 kb on - strandat 4353.696 kb on - strandat 4353.774 kb on + strandat 4353.774 kb on + strandat 4353.796 kb on + strandat 4353.796 kb on + strandat 4353.803 kb on + strandat 4353.804 kb on + strandat 4353.804 kb on + strandat 4353.804 kb on - strandat 4353.810 kb on + strandat 4353.811 kb on - strandat 4353.811 kb on - strandat 4353.811 kb on - strandat 4353.818 kb on - strandat 4353.847 kb on + strandat 4353.848 kb on - strandat 4353.850 kb on + strandat 4353.852 kb on + strandat 4353.860 kb on - strandat 4353.860 kb on - strandat 4353.860 kb on - strandat 4353.860 kb on - strandat 4353.868 kb on + strandat 4353.869 kb on + strandat 4353.876 kb on - strandat 4354.125 kb on - strandat 4354.174 kb on - strand, within SO_4181at 4354.210 kb on - strand, within SO_4181at 4354.221 kb on - strand, within SO_4181at 4354.296 kb on - strand, within SO_4181at 4354.313 kb on - strand, within SO_4181at 4354.363 kb on + strand, within SO_4181at 4354.373 kb on + strand, within SO_4181at 4354.440 kb on - strand, within SO_4181at 4354.532 kb on - strand, within SO_4181at 4354.532 kb on - strand, within SO_4181at 4354.552 kb on + strand, within SO_4181at 4354.557 kb on + strand, within SO_4181at 4354.590 kb on + strand, within SO_4181at 4354.590 kb on + strand, within SO_4181at 4354.598 kb on - strand, within SO_4181at 4354.676 kb on - strand, within SO_4181at 4354.723 kb on + strand, within SO_4181at 4354.723 kb on + strand, within SO_4181at 4354.840 kb on + strand, within SO_4181at 4354.912 kb on + strandat 4354.982 kb on - strandat 4355.022 kb on + strandat 4355.108 kb on - strand, within SO4182at 4355.113 kb on + strand, within SO4182at 4355.169 kb on + strand, within SO4182at 4355.171 kb on - strand, within SO4182at 4355.209 kb on + strand, within SO4182at 4355.214 kb on + strand, within SO4182at 4355.214 kb on + strand, within SO4182at 4355.222 kb on - strand, within SO4182at 4355.275 kb on - strand, within SO4182at 4355.291 kb on - strand, within SO4182at 4355.334 kb on - strand, within SO4182at 4355.372 kb on - strand, within SO4182at 4355.432 kb on + strand, within SO4182at 4355.526 kb on - strand, within SO4182at 4355.526 kb on - strand, within SO4182at 4355.526 kb on - strand, within SO4182at 4355.531 kb on + strandat 4355.591 kb on + strandat 4355.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,353,040 + SO4180 0.48 +2.1
4,353,040 + SO4180 0.48 +1.2
4,353,040 + SO4180 0.48 +2.2
4,353,040 + SO4180 0.48 +1.8
4,353,040 + SO4180 0.48 +1.9
4,353,047 - SO4180 0.49 +2.1
4,353,048 - SO4180 0.49 +2.1
4,353,048 - SO4180 0.49 +1.2
4,353,048 - SO4180 0.49 +1.5
4,353,098 - SO4180 0.53 +1.7
4,353,098 - SO4180 0.53 +1.7
4,353,098 - SO4180 0.53 +1.8
4,353,122 + SO4180 0.54 +1.5
4,353,122 + SO4180 0.54 +1.7
4,353,122 + SO4180 0.54 +1.7
4,353,122 + SO4180 0.54 +0.3
4,353,122 + SO4180 0.54 +2.4
4,353,141 - SO4180 0.56 +2.3
4,353,146 - SO4180 0.56 +1.8
4,353,178 - SO4180 0.58 +1.2
4,353,289 + SO4180 0.66 +1.9
4,353,305 + SO4180 0.67 +1.9
4,353,313 - SO4180 0.68 +0.8
4,353,313 - SO4180 0.68 +1.6
4,353,367 + SO4180 0.72 +1.9
4,353,388 + SO4180 0.73 +1.7
4,353,414 - SO4180 0.75 +1.9
4,353,462 - SO4180 0.79 +1.7
4,353,462 - SO4180 0.79 +0.5
4,353,560 + SO4180 0.86 +1.8
4,353,566 + SO4180 0.86 +1.7
4,353,568 + SO4180 0.86 +1.9
4,353,568 - SO4180 0.86 +1.7
4,353,568 - SO4180 0.86 +1.9
4,353,568 - SO4180 0.86 +0.8
4,353,568 - SO4180 0.86 +1.6
4,353,574 - SO4180 0.87 +1.5
4,353,574 - SO4180 0.87 +1.9
4,353,606 + SO4180 0.89 +1.9
4,353,606 + SO4180 0.89 +1.4
4,353,614 - SO4180 0.90 +1.3
4,353,614 - SO4180 0.90 +1.5
4,353,619 + +1.6
4,353,619 + +1.7
4,353,619 + +2.3
4,353,619 + +1.8
4,353,619 + +2.0
4,353,627 - +1.5
4,353,627 - +1.6
4,353,644 + +1.8
4,353,652 - +1.8
4,353,653 - +1.7
4,353,676 - +1.1
4,353,686 - +1.8
4,353,686 - +1.6
4,353,696 - +1.7
4,353,774 + +1.5
4,353,774 + +1.3
4,353,796 + +1.9
4,353,796 + +2.0
4,353,803 + +1.3
4,353,804 + +1.8
4,353,804 + +1.8
4,353,804 - +1.5
4,353,810 + +2.2
4,353,811 - +1.0
4,353,811 - +0.8
4,353,811 - +0.7
4,353,818 - +0.6
4,353,847 + +1.9
4,353,848 - +0.7
4,353,850 + +0.6
4,353,852 + +1.7
4,353,860 - +0.4
4,353,860 - +0.6
4,353,860 - +1.5
4,353,860 - +0.0
4,353,868 + +2.6
4,353,869 + +1.4
4,353,876 - +1.7
4,354,125 - -0.1
4,354,174 - SO_4181 0.15 +0.3
4,354,210 - SO_4181 0.19 +0.6
4,354,221 - SO_4181 0.20 +0.8
4,354,296 - SO_4181 0.28 +0.6
4,354,313 - SO_4181 0.30 +0.3
4,354,363 + SO_4181 0.35 -0.6
4,354,373 + SO_4181 0.36 -0.3
4,354,440 - SO_4181 0.44 +0.3
4,354,532 - SO_4181 0.54 -0.1
4,354,532 - SO_4181 0.54 +0.2
4,354,552 + SO_4181 0.56 +0.5
4,354,557 + SO_4181 0.56 +0.1
4,354,590 + SO_4181 0.60 -0.3
4,354,590 + SO_4181 0.60 +0.6
4,354,598 - SO_4181 0.61 +0.6
4,354,676 - SO_4181 0.69 +0.9
4,354,723 + SO_4181 0.75 +0.9
4,354,723 + SO_4181 0.75 -0.3
4,354,840 + SO_4181 0.87 -0.3
4,354,912 + -0.6
4,354,982 - +0.1
4,355,022 + +0.5
4,355,108 - SO4182 0.17 +0.5
4,355,113 + SO4182 0.18 -0.7
4,355,169 + SO4182 0.28 -0.2
4,355,171 - SO4182 0.28 -0.9
4,355,209 + SO4182 0.35 -0.9
4,355,214 + SO4182 0.36 -0.1
4,355,214 + SO4182 0.36 -0.8
4,355,222 - SO4182 0.37 +0.2
4,355,275 - SO4182 0.46 -0.0
4,355,291 - SO4182 0.49 -0.1
4,355,334 - SO4182 0.56 -0.3
4,355,372 - SO4182 0.63 -0.6
4,355,432 + SO4182 0.73 -0.2
4,355,526 - SO4182 0.90 +1.1
4,355,526 - SO4182 0.90 -0.3
4,355,526 - SO4182 0.90 +0.1
4,355,531 + -0.1
4,355,591 + -0.0
4,355,610 - -0.9

Or see this region's nucleotide sequence