Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_933 and HP15_934 are separated by 12 nucleotides HP15_934 and HP15_935 are separated by 24 nucleotides HP15_935 and HP15_936 are separated by 105 nucleotides
HP15_933: HP15_933 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, at 946,787 to 949,891
_933
HP15_934: HP15_934 - extradiol ring-cleavage dioxygenase, class III enzyme, subunit B, at 949,904 to 950,677
_934
HP15_935: HP15_935 - DoxD-like family protein, at 950,702 to 951,142
_935
HP15_936: HP15_936 - transcriptional regulator, LysR family protein, at 951,248 to 952,138
_936
Position (kb)
949
950
951 Strain fitness (log2 ratio)
-2
-1
0
1 at 948.977 kb on + strand, within HP15_933 at 948.978 kb on - strand, within HP15_933 at 948.983 kb on + strand, within HP15_933 at 948.990 kb on + strand, within HP15_933 at 949.028 kb on + strand, within HP15_933 at 949.085 kb on - strand, within HP15_933 at 949.112 kb on - strand, within HP15_933 at 949.119 kb on + strand, within HP15_933 at 949.127 kb on - strand, within HP15_933 at 949.189 kb on + strand, within HP15_933 at 949.254 kb on + strand, within HP15_933 at 949.273 kb on - strand, within HP15_933 at 949.333 kb on - strand, within HP15_933 at 949.529 kb on - strand, within HP15_933 at 949.553 kb on + strand, within HP15_933 at 949.559 kb on + strand, within HP15_933 at 949.691 kb on + strand at 949.699 kb on - strand at 949.701 kb on - strand at 949.787 kb on - strand at 949.932 kb on + strand at 949.940 kb on - strand at 950.087 kb on - strand, within HP15_934 at 950.110 kb on + strand, within HP15_934 at 950.146 kb on + strand, within HP15_934 at 950.272 kb on - strand, within HP15_934 at 950.399 kb on - strand, within HP15_934 at 950.411 kb on - strand, within HP15_934 at 950.414 kb on + strand, within HP15_934 at 950.471 kb on + strand, within HP15_934 at 950.585 kb on + strand, within HP15_934 at 950.645 kb on + strand at 951.000 kb on - strand, within HP15_935 at 951.005 kb on - strand, within HP15_935 at 951.074 kb on + strand, within HP15_935 at 951.309 kb on - strand at 951.321 kb on + strand at 951.321 kb on + strand at 951.328 kb on - strand at 951.329 kb on - strand at 951.329 kb on - strand at 951.381 kb on + strand, within HP15_936 at 951.381 kb on + strand, within HP15_936 at 951.389 kb on - strand, within HP15_936 at 951.533 kb on - strand, within HP15_936 at 951.608 kb on - strand, within HP15_936 at 951.626 kb on - strand, within HP15_936
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 948,977 + HP15_933 0.71 +0.1 948,978 - HP15_933 0.71 -0.6 948,983 + HP15_933 0.71 -1.8 948,990 + HP15_933 0.71 +0.3 949,028 + HP15_933 0.72 -0.2 949,085 - HP15_933 0.74 -0.0 949,112 - HP15_933 0.75 -0.7 949,119 + HP15_933 0.75 -0.5 949,127 - HP15_933 0.75 -0.0 949,189 + HP15_933 0.77 +0.1 949,254 + HP15_933 0.79 +0.2 949,273 - HP15_933 0.80 -0.1 949,333 - HP15_933 0.82 +0.5 949,529 - HP15_933 0.88 +0.0 949,553 + HP15_933 0.89 +0.3 949,559 + HP15_933 0.89 +0.3 949,691 + +0.3 949,699 - -0.2 949,701 - -1.0 949,787 - +0.3 949,932 + -0.7 949,940 - +0.5 950,087 - HP15_934 0.24 -0.1 950,110 + HP15_934 0.27 +0.0 950,146 + HP15_934 0.31 -0.3 950,272 - HP15_934 0.48 +0.0 950,399 - HP15_934 0.64 -0.8 950,411 - HP15_934 0.66 -0.5 950,414 + HP15_934 0.66 -0.9 950,471 + HP15_934 0.73 -0.4 950,585 + HP15_934 0.88 -0.1 950,645 + +0.4 951,000 - HP15_935 0.68 +0.1 951,005 - HP15_935 0.69 +0.3 951,074 + HP15_935 0.84 -0.0 951,309 - +0.1 951,321 + -0.5 951,321 + +0.3 951,328 - +0.6 951,329 - -0.1 951,329 - +0.1 951,381 + HP15_936 0.15 -0.0 951,381 + HP15_936 0.15 -0.1 951,389 - HP15_936 0.16 +0.5 951,533 - HP15_936 0.32 -0.4 951,608 - HP15_936 0.40 +0.6 951,626 - HP15_936 0.42 -0.3
Or see this region's nucleotide sequence