Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08570 and PGA1_c08580 are separated by 93 nucleotides PGA1_c08580 and PGA1_c08590 are separated by 94 nucleotides PGA1_c08590 and PGA1_c08600 overlap by 1 nucleotides
PGA1_c08570: PGA1_c08570 - putative trimethylamine methyltransferase, at 883,514 to 885,073
_c08570
PGA1_c08580: PGA1_c08580 - hypothetical protein, at 885,167 to 886,957
_c08580
PGA1_c08590: PGA1_c08590 - heme NO binding domain-containing protein, at 887,052 to 887,639
_c08590
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
Position (kb) 885
886
887 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 884.180 kb on + strand, within PGA1_c08570 at 884.182 kb on + strand, within PGA1_c08570 at 884.188 kb on - strand, within PGA1_c08570 at 884.301 kb on - strand, within PGA1_c08570 at 884.328 kb on - strand, within PGA1_c08570 at 884.355 kb on - strand, within PGA1_c08570 at 884.398 kb on + strand, within PGA1_c08570 at 884.515 kb on - strand, within PGA1_c08570 at 884.543 kb on - strand, within PGA1_c08570 at 884.556 kb on + strand, within PGA1_c08570 at 884.640 kb on - strand, within PGA1_c08570 at 884.796 kb on + strand, within PGA1_c08570 at 884.852 kb on + strand, within PGA1_c08570 at 884.860 kb on - strand, within PGA1_c08570 at 884.860 kb on - strand, within PGA1_c08570 at 884.862 kb on - strand, within PGA1_c08570 at 884.875 kb on + strand, within PGA1_c08570 at 884.875 kb on + strand, within PGA1_c08570 at 884.905 kb on + strand, within PGA1_c08570 at 884.906 kb on - strand, within PGA1_c08570 at 884.963 kb on - strand at 884.975 kb on - strand at 884.991 kb on + strand at 885.079 kb on + strand at 885.099 kb on + strand at 885.099 kb on + strand at 885.130 kb on + strand at 885.136 kb on - strand at 885.138 kb on - strand at 885.138 kb on - strand at 885.283 kb on + strand at 885.487 kb on - strand, within PGA1_c08580 at 885.618 kb on + strand, within PGA1_c08580 at 885.632 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.652 kb on + strand, within PGA1_c08580 at 885.826 kb on + strand, within PGA1_c08580 at 885.917 kb on - strand, within PGA1_c08580 at 885.947 kb on + strand, within PGA1_c08580 at 885.947 kb on + strand, within PGA1_c08580 at 885.952 kb on + strand, within PGA1_c08580 at 885.957 kb on + strand, within PGA1_c08580 at 885.960 kb on - strand, within PGA1_c08580 at 885.960 kb on - strand, within PGA1_c08580 at 885.965 kb on - strand, within PGA1_c08580 at 885.965 kb on - strand, within PGA1_c08580 at 886.061 kb on + strand, within PGA1_c08580 at 886.069 kb on - strand, within PGA1_c08580 at 886.097 kb on + strand, within PGA1_c08580 at 886.147 kb on + strand, within PGA1_c08580 at 886.243 kb on + strand, within PGA1_c08580 at 886.249 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.355 kb on + strand, within PGA1_c08580 at 886.377 kb on + strand, within PGA1_c08580 at 886.435 kb on + strand, within PGA1_c08580 at 886.443 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.502 kb on - strand, within PGA1_c08580 at 886.542 kb on + strand, within PGA1_c08580 at 886.553 kb on + strand, within PGA1_c08580 at 886.559 kb on + strand, within PGA1_c08580 at 886.689 kb on + strand, within PGA1_c08580 at 886.697 kb on - strand, within PGA1_c08580 at 886.741 kb on - strand, within PGA1_c08580 at 886.748 kb on + strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.756 kb on - strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.758 kb on + strand, within PGA1_c08580 at 886.775 kb on + strand, within PGA1_c08580 at 886.785 kb on + strand at 886.785 kb on + strand at 886.793 kb on + strand at 886.793 kb on - strand at 886.793 kb on - strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on - strand at 886.819 kb on + strand at 886.827 kb on - strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.852 kb on + strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.860 kb on - strand at 886.887 kb on - strand at 886.897 kb on + strand at 886.917 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.940 kb on + strand at 886.940 kb on - strand at 886.940 kb on - strand at 886.945 kb on + strand at 886.947 kb on - strand at 886.950 kb on + strand at 886.951 kb on + strand at 886.953 kb on + strand at 886.953 kb on - strand at 886.959 kb on - strand at 886.966 kb on - strand at 887.010 kb on - strand at 887.010 kb on - strand at 887.025 kb on - strand at 887.032 kb on + strand at 887.049 kb on + strand at 887.052 kb on - strand at 887.057 kb on - strand at 887.063 kb on + strand at 887.076 kb on + strand at 887.131 kb on + strand, within PGA1_c08590 at 887.171 kb on + strand, within PGA1_c08590 at 887.179 kb on + strand, within PGA1_c08590 at 887.184 kb on - strand, within PGA1_c08590 at 887.217 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.219 kb on - strand, within PGA1_c08590 at 887.293 kb on - strand, within PGA1_c08590 at 887.376 kb on - strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.388 kb on + strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.396 kb on - strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.466 kb on + strand, within PGA1_c08590 at 887.489 kb on + strand, within PGA1_c08590 at 887.513 kb on - strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.552 kb on + strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.555 kb on - strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.557 kb on + strand, within PGA1_c08590 at 887.560 kb on - strand, within PGA1_c08590 at 887.564 kb on + strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.565 kb on - strand, within PGA1_c08590 at 887.572 kb on - strand, within PGA1_c08590 at 887.578 kb on + strand, within PGA1_c08590 at 887.619 kb on - strand at 887.634 kb on + strand at 887.646 kb on - strand at 887.810 kb on + strand, within PGA1_c08600 at 887.814 kb on - strand, within PGA1_c08600 at 887.818 kb on - strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.836 kb on + strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.844 kb on - strand, within PGA1_c08600 at 887.858 kb on - strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.923 kb on + strand, within PGA1_c08600 at 887.931 kb on - strand, within PGA1_c08600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 884,180 + PGA1_c08570 0.43 +0.2 884,182 + PGA1_c08570 0.43 -1.7 884,188 - PGA1_c08570 0.43 -0.4 884,301 - PGA1_c08570 0.50 -1.2 884,328 - PGA1_c08570 0.52 -0.4 884,355 - PGA1_c08570 0.54 +0.1 884,398 + PGA1_c08570 0.57 -1.5 884,515 - PGA1_c08570 0.64 +0.8 884,543 - PGA1_c08570 0.66 -2.6 884,556 + PGA1_c08570 0.67 +1.1 884,640 - PGA1_c08570 0.72 +0.3 884,796 + PGA1_c08570 0.82 +0.1 884,852 + PGA1_c08570 0.86 -1.2 884,860 - PGA1_c08570 0.86 +0.6 884,860 - PGA1_c08570 0.86 -1.1 884,862 - PGA1_c08570 0.86 +1.5 884,875 + PGA1_c08570 0.87 +1.2 884,875 + PGA1_c08570 0.87 +0.5 884,905 + PGA1_c08570 0.89 -1.3 884,906 - PGA1_c08570 0.89 -1.7 884,963 - -0.5 884,975 - -3.2 884,991 + -0.2 885,079 + -0.5 885,099 + +0.5 885,099 + -1.6 885,130 + +0.3 885,136 - +0.8 885,138 - -1.2 885,138 - +0.1 885,283 + -0.7 885,487 - PGA1_c08580 0.18 +1.2 885,618 + PGA1_c08580 0.25 -1.0 885,632 + PGA1_c08580 0.26 +0.6 885,652 + PGA1_c08580 0.27 +0.1 885,652 + PGA1_c08580 0.27 -1.9 885,652 + PGA1_c08580 0.27 -1.7 885,826 + PGA1_c08580 0.37 +0.5 885,917 - PGA1_c08580 0.42 -0.6 885,947 + PGA1_c08580 0.44 +0.3 885,947 + PGA1_c08580 0.44 -1.4 885,952 + PGA1_c08580 0.44 +0.1 885,957 + PGA1_c08580 0.44 -2.8 885,960 - PGA1_c08580 0.44 -0.7 885,960 - PGA1_c08580 0.44 -2.1 885,965 - PGA1_c08580 0.45 +0.6 885,965 - PGA1_c08580 0.45 +1.1 886,061 + PGA1_c08580 0.50 -0.5 886,069 - PGA1_c08580 0.50 -0.4 886,097 + PGA1_c08580 0.52 -0.1 886,147 + PGA1_c08580 0.55 -1.0 886,243 + PGA1_c08580 0.60 +0.7 886,249 + PGA1_c08580 0.60 -2.2 886,355 + PGA1_c08580 0.66 +0.3 886,355 + PGA1_c08580 0.66 +0.0 886,377 + PGA1_c08580 0.68 -0.5 886,435 + PGA1_c08580 0.71 +1.5 886,443 - PGA1_c08580 0.71 -1.6 886,502 - PGA1_c08580 0.75 -0.7 886,502 - PGA1_c08580 0.75 -1.7 886,542 + PGA1_c08580 0.77 -1.4 886,553 + PGA1_c08580 0.77 -2.0 886,559 + PGA1_c08580 0.78 -0.8 886,689 + PGA1_c08580 0.85 -1.3 886,697 - PGA1_c08580 0.85 +0.8 886,741 - PGA1_c08580 0.88 +1.1 886,748 + PGA1_c08580 0.88 -0.8 886,756 - PGA1_c08580 0.89 -2.5 886,756 - PGA1_c08580 0.89 -0.6 886,758 + PGA1_c08580 0.89 -0.2 886,758 + PGA1_c08580 0.89 +0.2 886,758 + PGA1_c08580 0.89 -1.9 886,775 + PGA1_c08580 0.90 -2.2 886,785 + +0.1 886,785 + +0.8 886,793 + +0.8 886,793 - -1.5 886,793 - -2.0 886,801 - -1.3 886,801 - +1.4 886,811 - +1.3 886,819 + +1.1 886,827 - -0.0 886,852 + -2.4 886,852 + +0.3 886,852 + -2.6 886,852 + -0.7 886,852 + +2.3 886,852 + -0.1 886,852 + +0.1 886,852 + -0.5 886,852 + -2.1 886,852 + -0.3 886,852 + +0.1 886,860 - -2.1 886,860 - -1.8 886,860 - -1.7 886,860 - -0.2 886,860 - +0.3 886,860 - -0.5 886,860 - +1.8 886,860 - -1.2 886,860 - -0.2 886,887 - -1.1 886,897 + +1.1 886,917 + -3.9 886,932 + -1.1 886,932 + -0.9 886,932 + -1.4 886,932 + +1.6 886,940 + -0.1 886,940 - -1.7 886,940 - +0.4 886,945 + +1.1 886,947 - -1.7 886,950 + -1.1 886,951 + +0.2 886,953 + -0.9 886,953 - -0.2 886,959 - -0.2 886,966 - +1.9 887,010 - -1.6 887,010 - -1.4 887,025 - +0.5 887,032 + -0.7 887,049 + +1.6 887,052 - -0.9 887,057 - -0.9 887,063 + -1.5 887,076 + +1.2 887,131 + PGA1_c08590 0.13 +0.9 887,171 + PGA1_c08590 0.20 +1.0 887,179 + PGA1_c08590 0.22 -0.7 887,184 - PGA1_c08590 0.22 -0.1 887,217 - PGA1_c08590 0.28 +0.8 887,219 - PGA1_c08590 0.28 +1.8 887,219 - PGA1_c08590 0.28 +2.1 887,219 - PGA1_c08590 0.28 +1.7 887,293 - PGA1_c08590 0.41 +3.7 887,376 - PGA1_c08590 0.55 -0.3 887,388 + PGA1_c08590 0.57 +0.9 887,388 + PGA1_c08590 0.57 +0.9 887,396 - PGA1_c08590 0.59 -1.2 887,396 - PGA1_c08590 0.59 +0.5 887,396 - PGA1_c08590 0.59 +1.7 887,396 - PGA1_c08590 0.59 +1.8 887,466 + PGA1_c08590 0.70 +1.7 887,466 + PGA1_c08590 0.70 +0.1 887,489 + PGA1_c08590 0.74 -0.1 887,513 - PGA1_c08590 0.78 -0.0 887,552 + PGA1_c08590 0.85 +0.1 887,552 + PGA1_c08590 0.85 +0.6 887,555 - PGA1_c08590 0.86 +0.8 887,555 - PGA1_c08590 0.86 -1.0 887,557 + PGA1_c08590 0.86 +0.8 887,557 + PGA1_c08590 0.86 +1.3 887,557 + PGA1_c08590 0.86 -1.5 887,557 + PGA1_c08590 0.86 +1.3 887,557 + PGA1_c08590 0.86 +0.5 887,557 + PGA1_c08590 0.86 +1.3 887,560 - PGA1_c08590 0.86 -0.3 887,564 + PGA1_c08590 0.87 +0.9 887,565 - PGA1_c08590 0.87 -0.2 887,565 - PGA1_c08590 0.87 +2.0 887,565 - PGA1_c08590 0.87 +2.1 887,572 - PGA1_c08590 0.88 -0.5 887,578 + PGA1_c08590 0.89 -1.5 887,619 - +2.7 887,634 + -0.6 887,646 - +2.2 887,810 + PGA1_c08600 0.17 -0.1 887,814 - PGA1_c08600 0.17 +1.2 887,818 - PGA1_c08600 0.18 +1.1 887,836 + PGA1_c08600 0.20 +1.0 887,836 + PGA1_c08600 0.20 +0.9 887,836 + PGA1_c08600 0.20 +0.7 887,836 + PGA1_c08600 0.20 -0.4 887,844 - PGA1_c08600 0.20 +1.5 887,844 - PGA1_c08600 0.20 +1.8 887,844 - PGA1_c08600 0.20 +1.4 887,858 - PGA1_c08600 0.22 +1.6 887,923 + PGA1_c08600 0.28 +0.5 887,923 + PGA1_c08600 0.28 +0.6 887,931 - PGA1_c08600 0.29 +2.7
Or see this region's nucleotide sequence