Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04340

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04320 and PGA1_c04330 are separated by 71 nucleotidesPGA1_c04330 and PGA1_c04340 are separated by 0 nucleotidesPGA1_c04340 and PGA1_c04350 overlap by 4 nucleotides PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591 _c04320 PGA1_c04330: PGA1_c04330 - hypothetical protein, at 418,663 to 419,142 _c04330 PGA1_c04340: PGA1_c04340 - hypothetical protein, at 419,143 to 419,901 _c04340 PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040 _c04350 Position (kb) 419 420Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 418.146 kb on + strand, within PGA1_c04320at 418.218 kb on + strand, within PGA1_c04320at 418.226 kb on - strand, within PGA1_c04320at 418.254 kb on + strand, within PGA1_c04320at 418.254 kb on + strand, within PGA1_c04320at 418.262 kb on - strand, within PGA1_c04320at 418.262 kb on - strand, within PGA1_c04320at 418.275 kb on + strand, within PGA1_c04320at 418.275 kb on + strand, within PGA1_c04320at 418.285 kb on + strand, within PGA1_c04320at 418.293 kb on - strand, within PGA1_c04320at 418.374 kb on - strand, within PGA1_c04320at 418.387 kb on - strand, within PGA1_c04320at 418.387 kb on - strand, within PGA1_c04320at 418.438 kb on + strand, within PGA1_c04320at 418.457 kb on - strand, within PGA1_c04320at 418.473 kb on + strand, within PGA1_c04320at 418.586 kb on + strandat 418.630 kb on + strandat 418.638 kb on - strandat 418.638 kb on - strandat 418.652 kb on + strandat 418.659 kb on + strandat 418.659 kb on + strandat 418.672 kb on - strandat 418.672 kb on - strandat 418.692 kb on + strandat 418.695 kb on + strandat 418.698 kb on - strandat 418.705 kb on - strandat 418.800 kb on - strand, within PGA1_c04330at 418.850 kb on - strand, within PGA1_c04330at 418.859 kb on - strand, within PGA1_c04330at 418.878 kb on + strand, within PGA1_c04330at 418.911 kb on - strand, within PGA1_c04330at 418.948 kb on - strand, within PGA1_c04330at 419.007 kb on + strand, within PGA1_c04330at 419.010 kb on + strand, within PGA1_c04330at 419.015 kb on - strand, within PGA1_c04330at 419.015 kb on - strand, within PGA1_c04330at 419.061 kb on + strand, within PGA1_c04330at 419.070 kb on - strand, within PGA1_c04330at 419.081 kb on + strand, within PGA1_c04330at 419.089 kb on - strand, within PGA1_c04330at 419.116 kb on - strandat 419.176 kb on + strandat 419.176 kb on + strandat 419.188 kb on - strandat 419.244 kb on + strand, within PGA1_c04340at 419.395 kb on - strand, within PGA1_c04340at 419.395 kb on - strand, within PGA1_c04340at 419.453 kb on + strand, within PGA1_c04340at 419.490 kb on + strand, within PGA1_c04340at 419.524 kb on - strand, within PGA1_c04340at 419.557 kb on + strand, within PGA1_c04340at 419.631 kb on - strand, within PGA1_c04340at 419.839 kb on + strandat 419.883 kb on - strandat 419.883 kb on - strandat 419.892 kb on - strandat 419.927 kb on - strandat 419.927 kb on - strandat 419.930 kb on + strandat 420.000 kb on + strandat 420.008 kb on - strandat 420.068 kb on + strand, within PGA1_c04350at 420.068 kb on + strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.156 kb on + strand, within PGA1_c04350at 420.237 kb on + strand, within PGA1_c04350at 420.259 kb on - strand, within PGA1_c04350at 420.261 kb on - strand, within PGA1_c04350at 420.276 kb on - strand, within PGA1_c04350at 420.324 kb on + strand, within PGA1_c04350at 420.378 kb on + strand, within PGA1_c04350at 420.435 kb on - strand, within PGA1_c04350at 420.558 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.678 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.719 kb on - strand, within PGA1_c04350at 420.746 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.782 kb on + strand, within PGA1_c04350at 420.804 kb on + strand, within PGA1_c04350at 420.812 kb on - strand, within PGA1_c04350at 420.895 kb on - strand, within PGA1_c04350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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418,146 + PGA1_c04320 0.61 -0.3
418,218 + PGA1_c04320 0.67 -1.2
418,226 - PGA1_c04320 0.68 -1.2
418,254 + PGA1_c04320 0.70 -0.4
418,254 + PGA1_c04320 0.70 -3.1
418,262 - PGA1_c04320 0.71 -1.2
418,262 - PGA1_c04320 0.71 -0.1
418,275 + PGA1_c04320 0.72 -0.9
418,275 + PGA1_c04320 0.72 +0.4
418,285 + PGA1_c04320 0.73 -0.6
418,293 - PGA1_c04320 0.74 -1.0
418,374 - PGA1_c04320 0.81 +0.1
418,387 - PGA1_c04320 0.82 +1.4
418,387 - PGA1_c04320 0.82 -1.2
418,438 + PGA1_c04320 0.87 +2.8
418,457 - PGA1_c04320 0.88 +0.6
418,473 + PGA1_c04320 0.90 +0.5
418,586 + +0.7
418,630 + -0.1
418,638 - +0.4
418,638 - +0.8
418,652 + +0.2
418,659 + -0.3
418,659 + +1.0
418,672 - -1.6
418,672 - -1.6
418,692 + -1.3
418,695 + -2.2
418,698 - -0.2
418,705 - -2.3
418,800 - PGA1_c04330 0.29 -1.8
418,850 - PGA1_c04330 0.39 -0.9
418,859 - PGA1_c04330 0.41 +0.1
418,878 + PGA1_c04330 0.45 -3.0
418,911 - PGA1_c04330 0.52 -2.6
418,948 - PGA1_c04330 0.59 -2.1
419,007 + PGA1_c04330 0.72 -2.3
419,010 + PGA1_c04330 0.72 -1.5
419,015 - PGA1_c04330 0.73 -0.8
419,015 - PGA1_c04330 0.73 -1.2
419,061 + PGA1_c04330 0.83 -1.9
419,070 - PGA1_c04330 0.85 -2.2
419,081 + PGA1_c04330 0.87 +0.5
419,089 - PGA1_c04330 0.89 +1.0
419,116 - -2.0
419,176 + -3.8
419,176 + -2.9
419,188 - -2.7
419,244 + PGA1_c04340 0.13 -2.2
419,395 - PGA1_c04340 0.33 -2.6
419,395 - PGA1_c04340 0.33 -2.4
419,453 + PGA1_c04340 0.41 -0.6
419,490 + PGA1_c04340 0.46 -2.6
419,524 - PGA1_c04340 0.50 -3.0
419,557 + PGA1_c04340 0.55 -1.2
419,631 - PGA1_c04340 0.64 -0.8
419,839 + -2.6
419,883 - -2.6
419,883 - -2.4
419,892 - -1.8
419,927 - -0.8
419,927 - +0.6
419,930 + -2.2
420,000 + -2.0
420,008 - -2.3
420,068 + PGA1_c04350 0.15 -0.8
420,068 + PGA1_c04350 0.15 -1.6
420,076 - PGA1_c04350 0.16 -1.8
420,076 - PGA1_c04350 0.16 -2.6
420,076 - PGA1_c04350 0.16 -3.7
420,076 - PGA1_c04350 0.16 -1.4
420,156 + PGA1_c04350 0.23 +0.2
420,237 + PGA1_c04350 0.30 -2.5
420,259 - PGA1_c04350 0.32 -2.3
420,261 - PGA1_c04350 0.32 -2.3
420,276 - PGA1_c04350 0.33 -2.2
420,324 + PGA1_c04350 0.37 -2.5
420,378 + PGA1_c04350 0.42 -1.8
420,435 - PGA1_c04350 0.47 -3.3
420,558 + PGA1_c04350 0.58 -3.2
420,665 + PGA1_c04350 0.67 -3.0
420,665 + PGA1_c04350 0.67 -3.0
420,665 + PGA1_c04350 0.67 -0.4
420,665 + PGA1_c04350 0.67 -2.2
420,678 + PGA1_c04350 0.68 -1.4
420,701 + PGA1_c04350 0.70 -0.4
420,701 + PGA1_c04350 0.70 -2.9
420,701 + PGA1_c04350 0.70 -0.8
420,719 - PGA1_c04350 0.72 -2.4
420,746 - PGA1_c04350 0.74 -0.8
420,775 - PGA1_c04350 0.77 +2.2
420,775 - PGA1_c04350 0.77 -1.2
420,780 - PGA1_c04350 0.77 -3.2
420,780 - PGA1_c04350 0.77 -3.6
420,782 + PGA1_c04350 0.77 -2.0
420,804 + PGA1_c04350 0.79 -2.6
420,812 - PGA1_c04350 0.80 -3.1
420,895 - PGA1_c04350 0.87 -1.8

Or see this region's nucleotide sequence