Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00170 and PGA1_65p00180 are separated by 354 nucleotides PGA1_65p00180 and PGA1_65p00190 are separated by 21 nucleotides
PGA1_65p00170: PGA1_65p00170 - putative capsular polysaccharide biosynthesis protein, at 22,292 to 24,139
_65p00170
PGA1_65p00180: PGA1_65p00180 - putative sugar transferase, at 24,494 to 25,105
_65p00180
PGA1_65p00190: PGA1_65p00190 - putative NAD dependent epimerase/dehydratase, at 25,127 to 26,176
_65p00190
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 23.504 kb on - strand, within PGA1_65p00170 at 23.514 kb on - strand, within PGA1_65p00170 at 23.723 kb on - strand, within PGA1_65p00170 at 23.833 kb on - strand, within PGA1_65p00170 at 23.838 kb on - strand, within PGA1_65p00170 at 23.856 kb on - strand, within PGA1_65p00170 at 23.879 kb on + strand, within PGA1_65p00170 at 23.894 kb on - strand, within PGA1_65p00170 at 23.926 kb on + strand, within PGA1_65p00170 at 24.023 kb on + strand at 24.023 kb on + strand at 24.046 kb on - strand at 24.052 kb on + strand at 24.092 kb on + strand at 24.184 kb on + strand at 24.294 kb on + strand at 24.302 kb on - strand at 24.394 kb on - strand at 24.428 kb on - strand at 24.490 kb on + strand at 24.498 kb on - strand at 24.612 kb on + strand, within PGA1_65p00180 at 24.926 kb on + strand, within PGA1_65p00180 at 24.944 kb on + strand, within PGA1_65p00180 at 24.963 kb on - strand, within PGA1_65p00180 at 24.971 kb on - strand, within PGA1_65p00180 at 24.971 kb on - strand, within PGA1_65p00180 at 24.989 kb on - strand, within PGA1_65p00180 at 25.057 kb on + strand at 25.144 kb on - strand at 25.257 kb on + strand, within PGA1_65p00190 at 25.392 kb on - strand, within PGA1_65p00190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 23,504 - PGA1_65p00170 0.66 +0.6 23,514 - PGA1_65p00170 0.66 -0.1 23,723 - PGA1_65p00170 0.77 +0.9 23,833 - PGA1_65p00170 0.83 -0.1 23,838 - PGA1_65p00170 0.84 -1.1 23,856 - PGA1_65p00170 0.85 -1.1 23,879 + PGA1_65p00170 0.86 +2.2 23,894 - PGA1_65p00170 0.87 +0.5 23,926 + PGA1_65p00170 0.88 -0.1 24,023 + +0.9 24,023 + +0.9 24,046 - +0.3 24,052 + +1.3 24,092 + -0.7 24,184 + +2.5 24,294 + -1.4 24,302 - +4.1 24,394 - +1.3 24,428 - +0.9 24,490 + -0.4 24,498 - -1.1 24,612 + PGA1_65p00180 0.19 -0.1 24,926 + PGA1_65p00180 0.71 +0.9 24,944 + PGA1_65p00180 0.74 -0.1 24,963 - PGA1_65p00180 0.77 +0.9 24,971 - PGA1_65p00180 0.78 +2.5 24,971 - PGA1_65p00180 0.78 -1.7 24,989 - PGA1_65p00180 0.81 -1.1 25,057 + +2.9 25,144 - -0.1 25,257 + PGA1_65p00190 0.12 +0.9 25,392 - PGA1_65p00190 0.25 -0.1
Or see this region's nucleotide sequence