Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02120 and PGA1_262p02130 are separated by 1 nucleotides PGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotides PGA1_262p02140 and PGA1_262p02150 are separated by 273 nucleotides
PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365
_262p02120
PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741
_262p02130
PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142
_262p02140
PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815
_262p02150
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 229.742 kb on + strand, within PGA1_262p02120 at 229.771 kb on + strand, within PGA1_262p02120 at 229.794 kb on - strand, within PGA1_262p02120 at 229.803 kb on - strand, within PGA1_262p02120 at 229.807 kb on + strand, within PGA1_262p02120 at 229.815 kb on - strand, within PGA1_262p02120 at 229.833 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.899 kb on + strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.907 kb on - strand, within PGA1_262p02120 at 229.958 kb on - strand, within PGA1_262p02120 at 230.002 kb on + strand, within PGA1_262p02120 at 230.046 kb on - strand, within PGA1_262p02120 at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.268 kb on - strand at 230.292 kb on + strand at 230.300 kb on - strand at 230.477 kb on - strand, within PGA1_262p02130 at 230.533 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.597 kb on - strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.630 kb on - strand, within PGA1_262p02130 at 230.640 kb on + strand, within PGA1_262p02130 at 230.645 kb on - strand, within PGA1_262p02130 at 230.655 kb on - strand, within PGA1_262p02130 at 230.672 kb on + strand, within PGA1_262p02130 at 230.865 kb on - strand, within PGA1_262p02140 at 230.875 kb on + strand, within PGA1_262p02140 at 230.883 kb on - strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.936 kb on - strand, within PGA1_262p02140 at 230.952 kb on + strand, within PGA1_262p02140 at 230.979 kb on - strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.989 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.992 kb on + strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.067 kb on - strand, within PGA1_262p02140 at 231.075 kb on + strand, within PGA1_262p02140 at 231.213 kb on + strand at 231.245 kb on - strand at 231.250 kb on + strand at 231.252 kb on + strand at 231.272 kb on + strand at 231.279 kb on - strand at 231.282 kb on - strand at 231.371 kb on - strand at 231.371 kb on - strand at 231.381 kb on + strand at 231.389 kb on - strand at 231.402 kb on + strand at 231.402 kb on + strand at 231.455 kb on + strand at 231.458 kb on - strand at 231.478 kb on - strand at 231.505 kb on + strand at 231.518 kb on - strand at 231.570 kb on - strand at 231.585 kb on - strand at 231.632 kb on - strand at 231.632 kb on - strand at 231.638 kb on - strand at 231.643 kb on + strand at 231.669 kb on + strand, within PGA1_262p02150 at 231.681 kb on + strand, within PGA1_262p02150 at 231.691 kb on + strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.724 kb on + strand, within PGA1_262p02150 at 231.734 kb on - strand, within PGA1_262p02150 at 231.800 kb on + strand, within PGA1_262p02150 at 231.808 kb on - strand, within PGA1_262p02150 at 231.817 kb on + strand, within PGA1_262p02150 at 231.825 kb on - strand, within PGA1_262p02150 at 231.842 kb on + strand, within PGA1_262p02150 at 231.850 kb on - strand, within PGA1_262p02150 at 231.882 kb on - strand, within PGA1_262p02150 at 231.898 kb on - strand, within PGA1_262p02150 at 231.927 kb on + strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.937 kb on + strand, within PGA1_262p02150 at 231.982 kb on - strand, within PGA1_262p02150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 229,742 + PGA1_262p02120 0.71 -0.5 229,771 + PGA1_262p02120 0.72 +0.7 229,794 - PGA1_262p02120 0.73 -0.7 229,803 - PGA1_262p02120 0.74 -1.1 229,807 + PGA1_262p02120 0.74 -3.2 229,815 - PGA1_262p02120 0.74 -1.3 229,833 + PGA1_262p02120 0.75 +0.3 229,899 + PGA1_262p02120 0.78 -0.6 229,899 + PGA1_262p02120 0.78 +0.5 229,899 + PGA1_262p02120 0.78 +0.5 229,899 + PGA1_262p02120 0.78 -1.0 229,899 + PGA1_262p02120 0.78 +0.7 229,899 + PGA1_262p02120 0.78 -1.2 229,899 + PGA1_262p02120 0.78 -1.9 229,907 - PGA1_262p02120 0.79 +1.4 229,907 - PGA1_262p02120 0.79 +0.8 229,907 - PGA1_262p02120 0.79 +0.1 229,907 - PGA1_262p02120 0.79 -2.6 229,907 - PGA1_262p02120 0.79 -1.5 229,958 - PGA1_262p02120 0.81 -0.8 230,002 + PGA1_262p02120 0.83 -0.5 230,046 - PGA1_262p02120 0.85 -0.9 230,268 - -1.5 230,268 - +0.7 230,268 - +0.3 230,268 - -0.4 230,268 - -1.3 230,292 + +0.1 230,300 - -0.1 230,477 - PGA1_262p02130 0.29 +0.2 230,533 + PGA1_262p02130 0.44 +0.6 230,552 + PGA1_262p02130 0.49 -0.0 230,552 + PGA1_262p02130 0.49 +0.7 230,560 - PGA1_262p02130 0.51 -0.3 230,560 - PGA1_262p02130 0.51 +1.0 230,560 - PGA1_262p02130 0.51 -0.5 230,560 - PGA1_262p02130 0.51 +0.4 230,560 - PGA1_262p02130 0.51 -1.5 230,597 - PGA1_262p02130 0.61 -0.4 230,622 + PGA1_262p02130 0.68 -1.1 230,622 + PGA1_262p02130 0.68 -1.3 230,630 - PGA1_262p02130 0.70 +0.1 230,640 + PGA1_262p02130 0.73 +0.2 230,645 - PGA1_262p02130 0.74 -2.1 230,655 - PGA1_262p02130 0.77 +1.1 230,672 + PGA1_262p02130 0.81 +0.5 230,865 - PGA1_262p02140 0.31 +1.7 230,875 + PGA1_262p02140 0.34 +0.3 230,883 - PGA1_262p02140 0.36 +1.2 230,928 + PGA1_262p02140 0.47 +0.9 230,928 + PGA1_262p02140 0.47 -0.7 230,928 + PGA1_262p02140 0.47 -0.8 230,936 - PGA1_262p02140 0.49 -0.2 230,952 + PGA1_262p02140 0.53 -2.5 230,979 - PGA1_262p02140 0.60 +2.5 230,982 + PGA1_262p02140 0.60 +0.8 230,982 + PGA1_262p02140 0.60 +0.1 230,982 + PGA1_262p02140 0.60 -0.3 230,982 + PGA1_262p02140 0.60 +1.1 230,989 - PGA1_262p02140 0.62 +1.3 230,990 - PGA1_262p02140 0.62 -0.7 230,990 - PGA1_262p02140 0.62 -0.7 230,990 - PGA1_262p02140 0.62 +0.8 230,990 - PGA1_262p02140 0.62 +0.2 230,990 - PGA1_262p02140 0.62 -0.8 230,990 - PGA1_262p02140 0.62 +0.6 230,990 - PGA1_262p02140 0.62 -0.1 230,992 + PGA1_262p02140 0.63 +0.9 231,000 - PGA1_262p02140 0.65 -0.7 231,000 - PGA1_262p02140 0.65 +0.5 231,000 - PGA1_262p02140 0.65 -0.3 231,000 - PGA1_262p02140 0.65 +0.5 231,000 - PGA1_262p02140 0.65 -2.2 231,000 - PGA1_262p02140 0.65 +1.5 231,000 - PGA1_262p02140 0.65 -0.1 231,000 - PGA1_262p02140 0.65 +0.8 231,067 - PGA1_262p02140 0.81 +1.2 231,075 + PGA1_262p02140 0.83 +1.1 231,213 + -1.3 231,245 - +0.2 231,250 + +0.2 231,252 + -0.2 231,272 + -0.5 231,279 - +0.1 231,282 - -1.7 231,371 - +1.3 231,371 - +0.2 231,381 + -0.1 231,389 - +1.1 231,402 + -1.1 231,402 + +0.5 231,455 + -2.9 231,458 - -0.4 231,478 - +1.8 231,505 + +0.5 231,518 - +0.2 231,570 - -0.9 231,585 - -0.8 231,632 - -0.5 231,632 - +0.1 231,638 - -0.5 231,643 + -1.6 231,669 + PGA1_262p02150 0.11 +0.7 231,681 + PGA1_262p02150 0.11 +0.5 231,691 + PGA1_262p02150 0.11 -0.5 231,699 - PGA1_262p02150 0.12 +0.8 231,699 - PGA1_262p02150 0.12 -1.6 231,724 + PGA1_262p02150 0.13 +0.7 231,734 - PGA1_262p02150 0.13 +1.5 231,800 + PGA1_262p02150 0.16 -0.3 231,808 - PGA1_262p02150 0.16 -0.8 231,817 + PGA1_262p02150 0.17 -0.1 231,825 - PGA1_262p02150 0.17 -2.6 231,842 + PGA1_262p02150 0.18 +2.1 231,850 - PGA1_262p02150 0.18 +1.5 231,882 - PGA1_262p02150 0.19 -2.5 231,898 - PGA1_262p02150 0.20 +1.1 231,927 + PGA1_262p02150 0.21 -0.2 231,935 - PGA1_262p02150 0.22 +0.8 231,935 - PGA1_262p02150 0.22 -1.3 231,937 + PGA1_262p02150 0.22 -2.5 231,982 - PGA1_262p02150 0.24 +1.1
Or see this region's nucleotide sequence