Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02110

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotidesPGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotidesPGA1_262p02110 and PGA1_262p02120 overlap by 17 nucleotides PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860 _262p02090 PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761 _262p02100 PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246 _262p02110 PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365 _262p02120 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.779 kb on + strand, within PGA1_262p02090at 226.787 kb on - strand, within PGA1_262p02090at 226.824 kb on - strandat 226.896 kb on + strandat 226.896 kb on + strandat 226.899 kb on - strandat 226.902 kb on - strandat 226.902 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.949 kb on + strandat 226.976 kb on - strandat 227.014 kb on + strand, within PGA1_262p02100at 227.014 kb on + strand, within PGA1_262p02100at 227.022 kb on - strand, within PGA1_262p02100at 227.124 kb on + strand, within PGA1_262p02100at 227.143 kb on + strandat 227.143 kb on + strand, within PGA1_262p02100at 227.143 kb on + strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.181 kb on + strand, within PGA1_262p02100at 227.245 kb on - strand, within PGA1_262p02100at 227.247 kb on + strand, within PGA1_262p02100at 227.339 kb on - strand, within PGA1_262p02100at 227.371 kb on + strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.519 kb on + strand, within PGA1_262p02100at 227.522 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.566 kb on - strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.716 kb on + strandat 227.716 kb on + strandat 227.724 kb on - strandat 227.886 kb on + strand, within PGA1_262p02110at 227.887 kb on - strand, within PGA1_262p02110at 227.894 kb on - strand, within PGA1_262p02110at 227.956 kb on - strand, within PGA1_262p02110at 228.050 kb on - strand, within PGA1_262p02110at 228.154 kb on + strand, within PGA1_262p02110at 228.385 kb on + strandat 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.643 kb on + strand, within PGA1_262p02120at 228.648 kb on + strand, within PGA1_262p02120at 228.656 kb on - strand, within PGA1_262p02120at 228.661 kb on - strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.724 kb on - strand, within PGA1_262p02120at 228.728 kb on + strand, within PGA1_262p02120at 228.750 kb on + strand, within PGA1_262p02120at 228.764 kb on + strand, within PGA1_262p02120at 228.772 kb on - strand, within PGA1_262p02120at 228.797 kb on + strand, within PGA1_262p02120at 228.828 kb on - strand, within PGA1_262p02120at 229.034 kb on - strand, within PGA1_262p02120at 229.054 kb on + strand, within PGA1_262p02120at 229.093 kb on + strand, within PGA1_262p02120at 229.169 kb on - strand, within PGA1_262p02120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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226,779 + PGA1_262p02090 0.79 +0.3
226,787 - PGA1_262p02090 0.81 -0.4
226,824 - -0.2
226,896 + -1.3
226,896 + -0.2
226,899 - +0.2
226,902 - +0.2
226,902 - +1.1
226,904 - -0.2
226,904 - -3.2
226,904 - +1.5
226,904 - -0.2
226,949 + -0.1
226,976 - +1.7
227,014 + PGA1_262p02100 0.13 -0.3
227,014 + PGA1_262p02100 0.13 -1.1
227,022 - PGA1_262p02100 0.14 +0.6
227,124 + PGA1_262p02100 0.26 +0.3
227,143 + +0.5
227,143 + PGA1_262p02100 0.28 +1.3
227,143 + PGA1_262p02100 0.28 -0.6
227,151 - PGA1_262p02100 0.29 +0.3
227,151 - PGA1_262p02100 0.29 -1.1
227,181 + PGA1_262p02100 0.33 -1.0
227,245 - PGA1_262p02100 0.40 -1.3
227,247 + PGA1_262p02100 0.40 +1.5
227,339 - PGA1_262p02100 0.51 -0.4
227,371 + PGA1_262p02100 0.55 +1.0
227,371 - PGA1_262p02100 0.55 -1.1
227,371 - PGA1_262p02100 0.55 -0.0
227,372 - PGA1_262p02100 0.55 -1.6
227,372 - PGA1_262p02100 0.55 +0.9
227,397 + PGA1_262p02100 0.58 -3.1
227,397 + PGA1_262p02100 0.58 -0.8
227,405 - PGA1_262p02100 0.59 -0.2
227,405 - PGA1_262p02100 0.59 +2.2
227,519 + PGA1_262p02100 0.72 +0.5
227,522 + PGA1_262p02100 0.72 -0.8
227,548 + PGA1_262p02100 0.75 -0.7
227,548 + PGA1_262p02100 0.75 -0.3
227,566 - PGA1_262p02100 0.77 -1.1
227,662 + PGA1_262p02100 0.88 -0.5
227,662 + PGA1_262p02100 0.88 +0.5
227,716 + -0.2
227,716 + -0.6
227,724 - +1.0
227,886 + PGA1_262p02110 0.26 +0.3
227,887 - PGA1_262p02110 0.26 +0.2
227,894 - PGA1_262p02110 0.28 -1.4
227,956 - PGA1_262p02110 0.40 -1.5
228,050 - PGA1_262p02110 0.60 -1.4
228,154 + PGA1_262p02110 0.81 -2.5
228,385 + +0.4
228,504 + PGA1_262p02120 0.13 +0.5
228,504 + PGA1_262p02120 0.13 -0.6
228,504 + PGA1_262p02120 0.13 -1.3
228,504 + PGA1_262p02120 0.13 -1.3
228,504 + PGA1_262p02120 0.13 -0.5
228,504 + PGA1_262p02120 0.13 -2.1
228,504 + PGA1_262p02120 0.13 +0.3
228,504 + PGA1_262p02120 0.13 +1.0
228,504 + PGA1_262p02120 0.13 +0.1
228,504 + PGA1_262p02120 0.13 -1.6
228,512 - PGA1_262p02120 0.13 +1.3
228,512 - PGA1_262p02120 0.13 -1.1
228,512 - PGA1_262p02120 0.13 -1.5
228,512 - PGA1_262p02120 0.13 -2.5
228,512 - PGA1_262p02120 0.13 -0.8
228,512 - PGA1_262p02120 0.13 +0.5
228,512 - PGA1_262p02120 0.13 +0.4
228,512 - PGA1_262p02120 0.13 -1.4
228,643 + PGA1_262p02120 0.19 +2.1
228,648 + PGA1_262p02120 0.20 -0.7
228,656 - PGA1_262p02120 0.20 +0.8
228,661 - PGA1_262p02120 0.20 -0.4
228,673 + PGA1_262p02120 0.21 +1.3
228,673 + PGA1_262p02120 0.21 -2.5
228,724 - PGA1_262p02120 0.23 +0.8
228,728 + PGA1_262p02120 0.23 -1.8
228,750 + PGA1_262p02120 0.24 +0.5
228,764 + PGA1_262p02120 0.25 -2.8
228,772 - PGA1_262p02120 0.25 -0.6
228,797 + PGA1_262p02120 0.27 +0.9
228,828 - PGA1_262p02120 0.28 -1.8
229,034 - PGA1_262p02120 0.38 -1.0
229,054 + PGA1_262p02120 0.39 +0.9
229,093 + PGA1_262p02120 0.40 -0.3
229,169 - PGA1_262p02120 0.44 +0.5

Or see this region's nucleotide sequence