Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01440 and PGA1_262p01450 are separated by 62 nucleotides PGA1_262p01450 and PGA1_262p01460 overlap by 1 nucleotides
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440 at 157.464 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.535 kb on + strand, within PGA1_262p01440 at 157.762 kb on - strand, within PGA1_262p01440 at 157.831 kb on + strand, within PGA1_262p01440 at 157.928 kb on + strand at 157.928 kb on + strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.987 kb on + strand at 157.997 kb on + strand at 158.055 kb on + strand at 158.055 kb on + strand at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450 at 159.095 kb on + strand at 159.117 kb on + strand at 159.143 kb on - strand at 159.154 kb on + strand at 159.154 kb on + strand at 159.156 kb on + strand at 159.546 kb on + strand, within PGA1_262p01460 at 159.566 kb on + strand, within PGA1_262p01460 at 159.604 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 157,093 - PGA1_262p01440 0.40 +1.5 157,215 - PGA1_262p01440 0.48 -1.7 157,344 + PGA1_262p01440 0.56 -0.0 157,464 + PGA1_262p01440 0.64 -1.3 157,469 + PGA1_262p01440 0.64 -1.8 157,469 + PGA1_262p01440 0.64 +0.0 157,535 + PGA1_262p01440 0.68 -0.4 157,762 - PGA1_262p01440 0.83 -2.5 157,831 + PGA1_262p01440 0.88 +0.3 157,928 + +1.2 157,928 + +0.8 157,936 - +0.5 157,936 - +0.6 157,936 - +0.3 157,936 - -0.3 157,987 + -0.4 157,997 + +0.1 158,055 + -1.4 158,055 + +0.7 158,088 + +1.0 158,215 - PGA1_262p01450 0.13 -3.1 158,345 + PGA1_262p01450 0.26 -0.8 158,525 + PGA1_262p01450 0.44 +0.4 158,533 - PGA1_262p01450 0.45 -3.6 158,533 - PGA1_262p01450 0.45 -1.1 158,555 + PGA1_262p01450 0.47 -1.5 158,607 - PGA1_262p01450 0.53 +0.5 158,786 + PGA1_262p01450 0.71 -1.7 158,786 + PGA1_262p01450 0.71 -1.9 158,895 - PGA1_262p01450 0.82 -0.6 158,945 - PGA1_262p01450 0.87 -2.4 159,095 + -0.3 159,117 + +0.1 159,143 - +0.2 159,154 + +0.4 159,154 + +0.8 159,156 + +0.0 159,546 + PGA1_262p01460 0.31 -0.1 159,566 + PGA1_262p01460 0.33 +0.9 159,604 + PGA1_262p01460 0.35 +1.3 159,871 + PGA1_262p01460 0.53 +1.2 159,871 + PGA1_262p01460 0.53 -0.2 159,871 + PGA1_262p01460 0.53 +0.5 159,927 - PGA1_262p01460 0.57 +0.0 159,936 + PGA1_262p01460 0.57 +0.0 159,989 - PGA1_262p01460 0.61 +0.1
Or see this region's nucleotide sequence