Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01330

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotidesPGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotidesPGA1_262p01330 and PGA1_262p01340 are separated by 81 nucleotidesPGA1_262p01340 and PGA1_262p01350 are separated by 80 nucleotides PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187 _262p01310 PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936 _262p01320 PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480 _262p01330 PGA1_262p01340: PGA1_262p01340 - hypothetical protein, at 144,562 to 145,311 _262p01340 PGA1_262p01350: PGA1_262p01350 - putative vanillate O-demethylase oxidoreductase, at 145,392 to 146,336 _262p01350 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 143.018 kb on - strand, within PGA1_262p01310at 143.030 kb on - strand, within PGA1_262p01310at 143.292 kb on - strandat 143.496 kb on - strand, within PGA1_262p01320at 143.514 kb on + strand, within PGA1_262p01320at 143.739 kb on + strand, within PGA1_262p01320at 143.935 kb on + strandat 144.118 kb on + strand, within PGA1_262p01330at 144.604 kb on - strandat 144.650 kb on + strand, within PGA1_262p01340at 144.650 kb on + strand, within PGA1_262p01340at 144.658 kb on - strand, within PGA1_262p01340at 144.827 kb on + strand, within PGA1_262p01340at 144.830 kb on - strand, within PGA1_262p01340at 144.830 kb on - strand, within PGA1_262p01340at 144.865 kb on - strand, within PGA1_262p01340at 144.922 kb on + strand, within PGA1_262p01340at 145.005 kb on - strand, within PGA1_262p01340at 145.176 kb on - strand, within PGA1_262p01340at 145.177 kb on - strand, within PGA1_262p01340at 145.189 kb on + strand, within PGA1_262p01340at 145.213 kb on - strand, within PGA1_262p01340

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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143,018 - PGA1_262p01310 0.89 +0.7
143,030 - PGA1_262p01310 0.89 -1.3
143,292 - -2.3
143,496 - PGA1_262p01320 0.37 +0.1
143,514 + PGA1_262p01320 0.40 -1.7
143,739 + PGA1_262p01320 0.72 -0.5
143,935 + +0.4
144,118 + PGA1_262p01330 0.35 -0.6
144,604 - +1.2
144,650 + PGA1_262p01340 0.12 -0.9
144,650 + PGA1_262p01340 0.12 +1.3
144,658 - PGA1_262p01340 0.13 +0.5
144,827 + PGA1_262p01340 0.35 -1.4
144,830 - PGA1_262p01340 0.36 -0.2
144,830 - PGA1_262p01340 0.36 -1.1
144,865 - PGA1_262p01340 0.40 -1.5
144,922 + PGA1_262p01340 0.48 -0.7
145,005 - PGA1_262p01340 0.59 -0.5
145,176 - PGA1_262p01340 0.82 +0.0
145,177 - PGA1_262p01340 0.82 -0.0
145,189 + PGA1_262p01340 0.84 -2.5
145,213 - PGA1_262p01340 0.87 +1.7

Or see this region's nucleotide sequence