Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotides PGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotides PGA1_262p01330 and PGA1_262p01340 are separated by 81 nucleotides
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936
_262p01320
PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480
_262p01330
PGA1_262p01340: PGA1_262p01340 - hypothetical protein, at 144,562 to 145,311
_262p01340
Position (kb) 143
144 Strain fitness (log2 ratio) -2
-1
0
1 at 142.435 kb on - strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 143.018 kb on - strand, within PGA1_262p01310 at 143.030 kb on - strand, within PGA1_262p01310 at 143.292 kb on - strand at 143.496 kb on - strand, within PGA1_262p01320 at 143.514 kb on + strand, within PGA1_262p01320 at 143.739 kb on + strand, within PGA1_262p01320 at 143.935 kb on + strand at 144.118 kb on + strand, within PGA1_262p01330 at 144.604 kb on - strand at 144.650 kb on + strand, within PGA1_262p01340 at 144.650 kb on + strand, within PGA1_262p01340 at 144.658 kb on - strand, within PGA1_262p01340 at 144.827 kb on + strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.865 kb on - strand, within PGA1_262p01340 at 144.922 kb on + strand, within PGA1_262p01340
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 142,435 - PGA1_262p01310 0.49 -0.3 142,566 + PGA1_262p01310 0.58 -0.7 142,566 + PGA1_262p01310 0.58 -0.5 142,574 - PGA1_262p01310 0.59 -0.5 142,574 - PGA1_262p01310 0.59 -0.1 143,018 - PGA1_262p01310 0.89 +0.7 143,030 - PGA1_262p01310 0.89 -1.3 143,292 - -2.3 143,496 - PGA1_262p01320 0.37 +0.1 143,514 + PGA1_262p01320 0.40 -1.7 143,739 + PGA1_262p01320 0.72 -0.5 143,935 + +0.4 144,118 + PGA1_262p01330 0.35 -0.6 144,604 - +1.2 144,650 + PGA1_262p01340 0.12 -0.9 144,650 + PGA1_262p01340 0.12 +1.3 144,658 - PGA1_262p01340 0.13 +0.5 144,827 + PGA1_262p01340 0.35 -1.4 144,830 - PGA1_262p01340 0.36 -0.2 144,830 - PGA1_262p01340 0.36 -1.1 144,865 - PGA1_262p01340 0.40 -1.5 144,922 + PGA1_262p01340 0.48 -0.7
Or see this region's nucleotide sequence