Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00350

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00330 and PGA1_262p00340 overlap by 4 nucleotidesPGA1_262p00340 and PGA1_262p00350 overlap by 8 nucleotidesPGA1_262p00350 and PGA1_262p00360 are separated by 176 nucleotides PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884 _262p00330 PGA1_262p00340: PGA1_262p00340 - oligopeptide ABC transporter, ATP binding protein, at 37,881 to 38,879 _262p00340 PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674 _262p00350 PGA1_262p00360: PGA1_262p00360 - methyl-accepting chemotaxis protein, at 40,851 to 43,001 _262p00360 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.878 kb on + strandat 37.993 kb on + strand, within PGA1_262p00340at 38.079 kb on - strand, within PGA1_262p00340at 38.240 kb on + strand, within PGA1_262p00340at 38.546 kb on + strand, within PGA1_262p00340at 38.619 kb on - strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.738 kb on - strand, within PGA1_262p00340at 39.013 kb on + strandat 39.021 kb on - strandat 39.104 kb on + strand, within PGA1_262p00350at 39.147 kb on + strand, within PGA1_262p00350at 39.169 kb on + strand, within PGA1_262p00350at 39.210 kb on - strand, within PGA1_262p00350at 39.284 kb on - strand, within PGA1_262p00350at 39.471 kb on - strand, within PGA1_262p00350at 39.508 kb on - strand, within PGA1_262p00350at 39.591 kb on + strand, within PGA1_262p00350at 39.609 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.758 kb on - strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.794 kb on - strand, within PGA1_262p00350at 39.843 kb on + strand, within PGA1_262p00350at 39.848 kb on + strand, within PGA1_262p00350at 39.866 kb on - strand, within PGA1_262p00350at 39.897 kb on - strand, within PGA1_262p00350at 40.043 kb on - strand, within PGA1_262p00350at 40.095 kb on - strand, within PGA1_262p00350at 40.235 kb on + strand, within PGA1_262p00350at 40.339 kb on + strand, within PGA1_262p00350at 40.379 kb on - strand, within PGA1_262p00350at 40.397 kb on + strand, within PGA1_262p00350at 40.439 kb on - strand, within PGA1_262p00350at 40.522 kb on + strandat 40.547 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.747 kb on + strandat 40.747 kb on + strandat 40.747 kb on + strandat 40.755 kb on - strandat 40.755 kb on - strandat 40.783 kb on + strandat 40.808 kb on - strandat 40.862 kb on + strandat 41.010 kb on - strandat 41.084 kb on - strand, within PGA1_262p00360at 41.139 kb on + strand, within PGA1_262p00360at 41.218 kb on + strand, within PGA1_262p00360at 41.226 kb on - strand, within PGA1_262p00360at 41.438 kb on + strand, within PGA1_262p00360at 41.624 kb on + strand, within PGA1_262p00360at 41.624 kb on + strand, within PGA1_262p00360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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37,878 + -0.6
37,993 + PGA1_262p00340 0.11 -0.7
38,079 - PGA1_262p00340 0.20 +0.1
38,240 + PGA1_262p00340 0.36 -1.4
38,546 + PGA1_262p00340 0.67 -0.1
38,619 - PGA1_262p00340 0.74 +0.0
38,730 + PGA1_262p00340 0.85 -0.2
38,730 + PGA1_262p00340 0.85 -1.0
38,738 - PGA1_262p00340 0.86 +1.0
39,013 + +0.9
39,021 - -1.5
39,104 + PGA1_262p00350 0.13 +0.1
39,147 + PGA1_262p00350 0.15 +1.8
39,169 + PGA1_262p00350 0.16 -0.5
39,210 - PGA1_262p00350 0.19 +1.1
39,284 - PGA1_262p00350 0.23 +0.1
39,471 - PGA1_262p00350 0.33 +1.1
39,508 - PGA1_262p00350 0.35 +0.5
39,591 + PGA1_262p00350 0.40 +2.5
39,609 - PGA1_262p00350 0.41 +0.0
39,666 - PGA1_262p00350 0.44 +1.4
39,666 - PGA1_262p00350 0.44 -2.5
39,758 - PGA1_262p00350 0.49 -0.9
39,775 + PGA1_262p00350 0.50 +1.3
39,775 + PGA1_262p00350 0.50 +0.4
39,794 - PGA1_262p00350 0.51 -0.2
39,843 + PGA1_262p00350 0.54 +1.5
39,848 + PGA1_262p00350 0.54 +0.4
39,866 - PGA1_262p00350 0.55 +0.3
39,897 - PGA1_262p00350 0.57 +1.0
40,043 - PGA1_262p00350 0.65 -0.7
40,095 - PGA1_262p00350 0.68 +0.8
40,235 + PGA1_262p00350 0.76 +0.3
40,339 + PGA1_262p00350 0.81 +1.9
40,379 - PGA1_262p00350 0.84 +0.7
40,397 + PGA1_262p00350 0.85 +0.2
40,439 - PGA1_262p00350 0.87 -0.5
40,522 + +0.2
40,547 + +0.2
40,701 + -0.1
40,701 + -0.6
40,701 + +0.3
40,701 + -2.5
40,747 + -1.4
40,747 + -1.9
40,747 + -0.1
40,755 - -3.1
40,755 - +1.0
40,783 + -1.1
40,808 - -0.7
40,862 + -2.5
41,010 - -1.5
41,084 - PGA1_262p00360 0.11 +2.1
41,139 + PGA1_262p00360 0.13 -0.1
41,218 + PGA1_262p00360 0.17 +0.2
41,226 - PGA1_262p00360 0.17 +1.3
41,438 + PGA1_262p00360 0.27 +0.3
41,624 + PGA1_262p00360 0.36 -3.6
41,624 + PGA1_262p00360 0.36 -0.4

Or see this region's nucleotide sequence