Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_307 and HP15_308 are separated by 76 nucleotides HP15_308 and HP15_309 are separated by 8 nucleotides
HP15_307: HP15_307 - NAD-dependent epimerase/dehydratase, at 297,629 to 298,495
_307
HP15_308: HP15_308 - oxidative stress regulatory protein OxyR, at 298,572 to 299,531
_308
HP15_309: HP15_309 - DNA helicase, ATP-dependent, RecG, at 299,540 to 301,615
_309
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1
2 at 297.627 kb on + strand at 297.698 kb on + strand at 297.805 kb on + strand, within HP15_307 at 297.813 kb on - strand, within HP15_307 at 297.845 kb on + strand, within HP15_307 at 297.850 kb on + strand, within HP15_307 at 297.906 kb on - strand, within HP15_307 at 297.908 kb on + strand, within HP15_307 at 297.934 kb on + strand, within HP15_307 at 297.964 kb on + strand, within HP15_307 at 298.080 kb on + strand, within HP15_307 at 298.221 kb on + strand, within HP15_307 at 298.231 kb on - strand, within HP15_307 at 298.241 kb on + strand, within HP15_307 at 298.256 kb on + strand, within HP15_307 at 298.304 kb on - strand, within HP15_307 at 298.333 kb on + strand, within HP15_307 at 298.479 kb on - strand at 298.571 kb on - strand at 298.576 kb on - strand at 298.576 kb on - strand at 298.677 kb on - strand, within HP15_308 at 298.810 kb on - strand, within HP15_308 at 298.811 kb on - strand, within HP15_308 at 298.870 kb on - strand, within HP15_308 at 298.890 kb on - strand, within HP15_308 at 298.949 kb on + strand, within HP15_308 at 298.957 kb on - strand, within HP15_308 at 299.173 kb on - strand, within HP15_308 at 299.301 kb on - strand, within HP15_308 at 299.401 kb on - strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.506 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.580 kb on - strand at 299.580 kb on - strand at 299.644 kb on + strand at 299.841 kb on + strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.947 kb on + strand, within HP15_309 at 299.963 kb on + strand, within HP15_309 at 299.972 kb on + strand, within HP15_309 at 299.980 kb on - strand, within HP15_309 at 300.051 kb on + strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.175 kb on + strand, within HP15_309 at 300.231 kb on + strand, within HP15_309 at 300.246 kb on + strand, within HP15_309 at 300.254 kb on - strand, within HP15_309 at 300.304 kb on + strand, within HP15_309 at 300.405 kb on - strand, within HP15_309 at 300.427 kb on - strand, within HP15_309
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 297,627 + +0.1 297,698 + +0.4 297,805 + HP15_307 0.20 -0.0 297,813 - HP15_307 0.21 +0.2 297,845 + HP15_307 0.25 +0.1 297,850 + HP15_307 0.25 +0.5 297,906 - HP15_307 0.32 +0.2 297,908 + HP15_307 0.32 -0.1 297,934 + HP15_307 0.35 -0.4 297,964 + HP15_307 0.39 -1.0 298,080 + HP15_307 0.52 +0.1 298,221 + HP15_307 0.68 -1.4 298,231 - HP15_307 0.69 +0.3 298,241 + HP15_307 0.71 +0.6 298,256 + HP15_307 0.72 +1.1 298,304 - HP15_307 0.78 -0.1 298,333 + HP15_307 0.81 +0.3 298,479 - -0.3 298,571 - -0.1 298,576 - +1.4 298,576 - +0.3 298,677 - HP15_308 0.11 +1.0 298,810 - HP15_308 0.25 +0.4 298,811 - HP15_308 0.25 +0.5 298,870 - HP15_308 0.31 +0.9 298,890 - HP15_308 0.33 +1.0 298,949 + HP15_308 0.39 +0.1 298,957 - HP15_308 0.40 +1.2 299,173 - HP15_308 0.63 +0.4 299,301 - HP15_308 0.76 +0.3 299,401 - HP15_308 0.86 +0.5 299,435 + HP15_308 0.90 +0.6 299,435 + HP15_308 0.90 +0.7 299,506 + -0.3 299,572 + +0.1 299,572 + +0.5 299,572 + +0.8 299,580 - +1.3 299,580 - +1.0 299,644 + +0.4 299,841 + HP15_309 0.14 +0.4 299,914 - HP15_309 0.18 +1.5 299,914 - HP15_309 0.18 +1.1 299,947 + HP15_309 0.20 +1.1 299,963 + HP15_309 0.20 +1.3 299,972 + HP15_309 0.21 +1.2 299,980 - HP15_309 0.21 +0.8 300,051 + HP15_309 0.25 +1.5 300,059 - HP15_309 0.25 +1.2 300,059 - HP15_309 0.25 +0.7 300,175 + HP15_309 0.31 -0.1 300,231 + HP15_309 0.33 +2.3 300,246 + HP15_309 0.34 +0.5 300,254 - HP15_309 0.34 -0.6 300,304 + HP15_309 0.37 +0.1 300,405 - HP15_309 0.42 +1.3 300,427 - HP15_309 0.43 +1.1
Or see this region's nucleotide sequence