Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2994 and HP15_2995 are separated by 9 nucleotides HP15_2995 and HP15_2996 are separated by 107 nucleotides
HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493
_2994
HP15_2995: HP15_2995 - short-chain dehydrogenase/reductase SDR, at 3,138,503 to 3,139,249
_2995
HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553
_2996
Position (kb)
3138
3139
3140 Strain fitness (log2 ratio)
-1
0
1 at 3138.487 kb on + strand at 3138.495 kb on - strand at 3138.573 kb on - strand at 3138.587 kb on + strand, within HP15_2995 at 3138.676 kb on - strand, within HP15_2995 at 3138.745 kb on - strand, within HP15_2995 at 3138.789 kb on + strand, within HP15_2995 at 3138.967 kb on - strand, within HP15_2995 at 3139.052 kb on - strand, within HP15_2995 at 3139.056 kb on + strand, within HP15_2995 at 3139.127 kb on + strand, within HP15_2995 at 3139.183 kb on - strand at 3139.230 kb on + strand at 3139.404 kb on + strand at 3139.458 kb on + strand at 3139.474 kb on - strand at 3139.657 kb on + strand, within HP15_2996 at 3139.714 kb on + strand, within HP15_2996 at 3139.826 kb on + strand, within HP15_2996 at 3139.980 kb on - strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3140.050 kb on + strand, within HP15_2996 at 3140.058 kb on - strand, within HP15_2996 at 3140.156 kb on - strand, within HP15_2996
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 3,138,487 + -0.1 3,138,495 - +0.7 3,138,573 - +0.3 3,138,587 + HP15_2995 0.11 -0.1 3,138,676 - HP15_2995 0.23 +0.2 3,138,745 - HP15_2995 0.32 +1.0 3,138,789 + HP15_2995 0.38 +0.6 3,138,967 - HP15_2995 0.62 +0.1 3,139,052 - HP15_2995 0.73 +0.1 3,139,056 + HP15_2995 0.74 +0.2 3,139,127 + HP15_2995 0.84 +1.0 3,139,183 - +0.2 3,139,230 + +0.2 3,139,404 + +0.3 3,139,458 + -0.3 3,139,474 - -0.1 3,139,657 + HP15_2996 0.25 -0.6 3,139,714 + HP15_2996 0.30 -1.1 3,139,826 + HP15_2996 0.39 -0.5 3,139,980 - HP15_2996 0.52 -0.9 3,139,992 + HP15_2996 0.53 +0.4 3,139,992 + HP15_2996 0.53 +0.2 3,140,050 + HP15_2996 0.58 -0.7 3,140,058 - HP15_2996 0.59 -0.2 3,140,156 - HP15_2996 0.67 -0.5
Or see this region's nucleotide sequence