Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides PGA1_c03050 and PGA1_c03060 are separated by 3 nucleotides
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 290.908 kb on - strand, within PGA1_c03020 at 290.924 kb on - strand, within PGA1_c03020 at 291.003 kb on + strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.094 kb on + strand, within PGA1_c03020 at 291.100 kb on + strand, within PGA1_c03020 at 291.118 kb on - strand, within PGA1_c03020 at 291.157 kb on + strand, within PGA1_c03020 at 291.165 kb on - strand, within PGA1_c03020 at 291.228 kb on + strand at 291.236 kb on - strand at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand at 292.330 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.338 kb on - strand, within PGA1_c03050 at 292.343 kb on - strand, within PGA1_c03050 at 292.365 kb on - strand, within PGA1_c03050 at 292.408 kb on + strand, within PGA1_c03050 at 292.416 kb on - strand, within PGA1_c03050 at 292.425 kb on + strand, within PGA1_c03050 at 292.426 kb on - strand, within PGA1_c03050 at 292.552 kb on + strand, within PGA1_c03050 at 292.602 kb on + strand, within PGA1_c03050 at 292.610 kb on - strand, within PGA1_c03050 at 292.653 kb on - strand, within PGA1_c03050 at 292.763 kb on - strand at 292.887 kb on + strand at 292.898 kb on + strand at 292.898 kb on + strand at 293.003 kb on + strand, within PGA1_c03060 at 293.191 kb on - strand, within PGA1_c03060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 290,908 - PGA1_c03020 0.68 -0.4 290,924 - PGA1_c03020 0.70 -1.1 291,003 + PGA1_c03020 0.76 +1.5 291,013 - PGA1_c03020 0.76 -2.4 291,013 - PGA1_c03020 0.76 -1.1 291,093 + PGA1_c03020 0.82 -1.1 291,093 + PGA1_c03020 0.82 +0.2 291,094 + PGA1_c03020 0.83 +0.2 291,100 + PGA1_c03020 0.83 +0.6 291,118 - PGA1_c03020 0.84 +0.7 291,157 + PGA1_c03020 0.87 -1.8 291,165 - PGA1_c03020 0.88 -0.2 291,228 + -0.1 291,236 - -1.1 291,248 + +2.2 291,256 - -1.6 291,313 - -0.8 291,313 - +2.2 291,317 + -0.5 291,344 + +1.5 291,349 + -0.9 291,349 + +1.2 291,349 + -2.9 291,349 + +0.2 291,349 + +0.5 291,357 - +1.9 291,357 - +2.2 291,357 - -0.8 291,357 - +2.2 291,357 - +0.1 291,357 - +2.8 291,357 - +1.0 291,357 - +0.1 291,357 - -0.5 291,357 - -0.4 291,370 + -0.1 291,374 - -0.9 291,425 + PGA1_c03030 0.18 -1.0 291,433 - PGA1_c03030 0.20 -1.8 291,487 - PGA1_c03030 0.30 -0.2 291,487 - PGA1_c03030 0.30 -2.0 291,511 - PGA1_c03030 0.34 -0.1 291,515 + PGA1_c03030 0.35 -0.6 291,523 - PGA1_c03030 0.37 +0.3 291,528 + PGA1_c03030 0.37 +1.8 291,576 + PGA1_c03030 0.46 +1.2 291,616 + PGA1_c03030 0.54 +0.8 291,616 + PGA1_c03030 0.54 -0.1 291,624 - PGA1_c03030 0.55 +0.4 291,650 + PGA1_c03030 0.60 +0.6 291,710 + PGA1_c03030 0.72 +1.0 291,710 + PGA1_c03030 0.72 +0.0 291,710 + PGA1_c03030 0.72 +1.1 291,710 + PGA1_c03030 0.72 -0.4 291,710 + PGA1_c03030 0.72 -0.4 291,710 + PGA1_c03030 0.72 -0.8 291,710 + PGA1_c03030 0.72 +0.8 291,710 + PGA1_c03030 0.72 -0.1 291,710 + PGA1_c03030 0.72 +0.2 291,710 + PGA1_c03030 0.72 +0.2 291,710 + PGA1_c03030 0.72 +1.7 291,718 - PGA1_c03030 0.73 +0.2 291,718 - PGA1_c03030 0.73 +1.5 291,718 - PGA1_c03030 0.73 -2.1 291,718 - PGA1_c03030 0.73 +0.3 291,718 - PGA1_c03030 0.73 +0.8 291,718 - PGA1_c03030 0.73 -1.9 291,720 + PGA1_c03030 0.73 -0.5 291,728 - PGA1_c03030 0.75 -1.3 291,728 - PGA1_c03030 0.75 -2.1 291,731 + PGA1_c03030 0.75 +1.0 291,752 + PGA1_c03030 0.79 +1.6 291,752 + PGA1_c03030 0.79 -0.4 291,752 + PGA1_c03030 0.79 -0.8 291,752 + PGA1_c03030 0.79 -0.3 291,752 + PGA1_c03030 0.79 +1.4 291,752 + PGA1_c03030 0.79 -1.4 291,760 - PGA1_c03030 0.81 +1.6 291,760 - PGA1_c03030 0.81 +1.2 291,760 - PGA1_c03030 0.81 +0.6 291,760 - PGA1_c03030 0.81 -0.0 291,760 - PGA1_c03030 0.81 +0.6 291,760 - PGA1_c03030 0.81 +2.2 291,760 - PGA1_c03030 0.81 +0.7 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 -2.1 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +0.9 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 -2.8 291,760 - PGA1_c03030 0.81 -0.5 291,762 + PGA1_c03030 0.81 -0.7 291,762 + PGA1_c03030 0.81 +0.6 291,762 + PGA1_c03030 0.81 -1.6 291,762 + PGA1_c03030 0.81 -0.8 291,762 + PGA1_c03030 0.81 +1.7 291,762 + PGA1_c03030 0.81 +1.2 291,762 + PGA1_c03030 0.81 +0.3 291,762 + PGA1_c03030 0.81 -0.8 291,770 - PGA1_c03030 0.83 +0.5 291,770 - PGA1_c03030 0.83 -0.5 291,770 - PGA1_c03030 0.83 +1.0 291,770 - PGA1_c03030 0.83 +1.4 291,770 - PGA1_c03030 0.83 +2.2 291,770 - PGA1_c03030 0.83 +0.9 291,772 + PGA1_c03030 0.83 -0.4 291,772 + PGA1_c03030 0.83 +1.2 291,780 - PGA1_c03030 0.85 +0.9 291,780 - PGA1_c03030 0.85 +1.6 291,784 + PGA1_c03030 0.85 +0.9 291,806 - PGA1_c03030 0.90 -1.0 291,825 + -0.8 291,851 + +1.4 291,851 + -1.6 291,851 + +1.4 291,856 + -1.4 291,856 + -0.3 291,856 + +0.8 291,856 + +1.6 291,856 + -0.6 291,856 + -1.5 291,859 - +0.1 291,859 - -0.3 291,863 + +0.6 291,864 - -1.1 291,864 - +1.1 291,864 - -0.4 291,864 - +0.4 291,864 - -0.4 291,864 - +1.2 291,864 - -1.4 291,864 - -0.8 291,864 - +0.2 291,864 - +2.4 291,893 + -1.8 291,898 + PGA1_c03040 0.10 +0.8 291,898 + PGA1_c03040 0.10 +0.7 291,906 - PGA1_c03040 0.12 -1.4 291,918 - PGA1_c03040 0.16 -1.8 291,924 + PGA1_c03040 0.17 +0.6 291,932 + PGA1_c03040 0.19 -1.1 291,940 - PGA1_c03040 0.21 -2.4 291,963 - PGA1_c03040 0.27 +0.2 291,968 - PGA1_c03040 0.29 -0.4 292,007 - PGA1_c03040 0.39 +0.1 292,063 + PGA1_c03040 0.53 -3.3 292,093 - PGA1_c03040 0.61 -0.8 292,093 - PGA1_c03040 0.61 -1.1 292,117 + PGA1_c03040 0.67 -1.3 292,117 + PGA1_c03040 0.67 +0.6 292,183 + PGA1_c03040 0.85 +0.2 292,214 + -2.1 292,239 - -0.6 292,273 + -0.1 292,276 - -1.8 292,276 - +3.2 292,330 + PGA1_c03050 0.16 +1.2 292,335 + PGA1_c03050 0.16 +0.2 292,335 + PGA1_c03050 0.16 -1.1 292,335 + PGA1_c03050 0.16 +0.2 292,338 - PGA1_c03050 0.17 -2.2 292,343 - PGA1_c03050 0.18 -0.2 292,365 - PGA1_c03050 0.22 +2.9 292,408 + PGA1_c03050 0.30 -1.6 292,416 - PGA1_c03050 0.31 -2.3 292,425 + PGA1_c03050 0.33 +0.2 292,426 - PGA1_c03050 0.33 +0.8 292,552 + PGA1_c03050 0.55 -0.6 292,602 + PGA1_c03050 0.64 +1.0 292,610 - PGA1_c03050 0.66 -1.0 292,653 - PGA1_c03050 0.73 -2.0 292,763 - +0.9 292,887 + -2.0 292,898 + +2.2 292,898 + -1.1 293,003 + PGA1_c03060 0.20 -1.6 293,191 - PGA1_c03060 0.39 +0.2
Or see this region's nucleotide sequence