Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25350

Experiment: m.b. methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. methylglyoxal 0.008 vol%
2,640,294	+				-2.4
2,640,299	+				+1.6
2,640,299	+				+1.3
2,640,299	+				-1.3
2,640,299	+				-0.3
2,640,299	+				+0.7
2,640,307	-				+0.9
2,640,307	-				+0.9
2,640,307	-				-2.1
2,640,309	+				-0.2
2,640,309	+				-0.1
2,640,309	+				-1.8
2,640,309	+				-0.9
2,640,317	-				-0.5
2,640,317	-				-0.2
2,640,317	-				+1.1
2,640,317	-				-1.3
2,640,317	-				+0.0
2,640,317	-				-0.5
2,640,335	+				+0.1
2,640,350	+				+0.4
2,640,371	-				-0.8
2,640,404	+		PGA1_c25340	0.11	+0.3
2,640,404	+		PGA1_c25340	0.11	+0.9
2,640,412	+		PGA1_c25340	0.12	+1.1
2,640,420	-		PGA1_c25340	0.13	+0.9
2,640,467	+		PGA1_c25340	0.19	+0.1
2,640,467	+		PGA1_c25340	0.19	+2.4
2,640,475	-		PGA1_c25340	0.19	-0.8
2,640,475	-		PGA1_c25340	0.19	-1.1
2,640,475	-		PGA1_c25340	0.19	-0.3
2,640,475	-		PGA1_c25340	0.19	+0.3
2,640,475	-		PGA1_c25340	0.19	-0.5
2,640,494	-		PGA1_c25340	0.22	+1.1
2,640,503	+		PGA1_c25340	0.23	+0.7
2,640,503	+		PGA1_c25340	0.23	-0.7
2,640,511	-		PGA1_c25340	0.24	-2.1
2,640,512	-		PGA1_c25340	0.24	-2.3
2,640,516	+		PGA1_c25340	0.24	-0.7
2,640,516	+		PGA1_c25340	0.24	+0.2
2,640,517	-		PGA1_c25340	0.24	-1.5
2,640,524	-		PGA1_c25340	0.25	-0.8
2,640,524	-		PGA1_c25340	0.25	+0.5
2,640,524	-		PGA1_c25340	0.25	-0.1
2,640,540	+		PGA1_c25340	0.27	+1.1
2,640,545	-		PGA1_c25340	0.28	+1.2
2,640,546	-		PGA1_c25340	0.28	+0.1
2,640,548	+		PGA1_c25340	0.28	+0.0
2,640,556	-		PGA1_c25340	0.29	+0.1
2,640,556	-		PGA1_c25340	0.29	-2.1
2,640,583	+		PGA1_c25340	0.32	-1.1
2,640,583	-		PGA1_c25340	0.32	-2.8
2,640,601	-		PGA1_c25340	0.34	+0.2
2,640,627	+		PGA1_c25340	0.37	+1.8
2,640,690	-		PGA1_c25340	0.44	-1.2
2,640,725	+		PGA1_c25340	0.48	-0.6
2,640,733	-		PGA1_c25340	0.49	+1.1
2,640,783	+		PGA1_c25340	0.55	+0.7
2,640,784	-		PGA1_c25340	0.55	+0.8
2,640,825	+		PGA1_c25340	0.60	-0.0
2,640,859	-		PGA1_c25340	0.64	-3.3
2,640,913	+		PGA1_c25340	0.70	-0.6
2,640,921	-		PGA1_c25340	0.71	+0.5
2,640,921	-		PGA1_c25340	0.71	-2.6
2,640,988	-		PGA1_c25340	0.79	-0.4
2,640,989	-		PGA1_c25340	0.79	-0.2
2,641,034	-		PGA1_c25340	0.84	+0.5
2,641,034	-		PGA1_c25340	0.84	-1.3
2,641,094	+				-0.5
2,641,094	+				-0.9
2,641,094	+				+0.1
2,641,097	+				-0.6
2,641,099	+				-1.0
2,641,099	+				+2.5
2,641,099	+				-2.3
2,641,099	+				-1.9
2,641,099	+				+0.2
2,641,102	-				-0.5
2,641,102	-				+0.4
2,641,107	-				-0.6
2,641,107	-				-0.4
2,641,107	-				+1.5
2,641,107	-				+1.4
2,641,142	+				+1.1
2,641,167	-				+1.1
2,641,167	-				-2.3
2,641,186	+				+0.9
2,641,203	-				-0.4
2,641,273	-				-1.1
2,641,273	-				-0.7
2,641,283	-				+0.9
2,641,376	+		PGA1_c25350	0.16	-1.5
2,641,383	-		PGA1_c25350	0.17	+1.1
2,641,384	-		PGA1_c25350	0.17	+0.6
2,641,385	+		PGA1_c25350	0.17	-0.3
2,641,392	+		PGA1_c25350	0.19	-1.5
2,641,393	-		PGA1_c25350	0.19	+0.4
2,641,400	+		PGA1_c25350	0.20	+0.8
2,641,407	-		PGA1_c25350	0.21	+3.6
2,641,408	-		PGA1_c25350	0.21	+1.5
2,641,466	-		PGA1_c25350	0.31	+2.7
2,641,472	-		PGA1_c25350	0.32	-1.5
2,641,472	-		PGA1_c25350	0.32	+0.3
2,641,480	+		PGA1_c25350	0.33	+0.5
2,641,487	+		PGA1_c25350	0.34	-1.6
2,641,502	+		PGA1_c25350	0.37	-1.2
2,641,502	+		PGA1_c25350	0.37	-0.1
2,641,510	-		PGA1_c25350	0.38	+1.1
2,641,584	-		PGA1_c25350	0.50	-1.2
2,641,635	-		PGA1_c25350	0.58	+1.3
2,641,635	-		PGA1_c25350	0.58	+1.1
2,641,669	-		PGA1_c25350	0.64	-0.3
2,641,782	-		PGA1_c25350	0.82	+1.1
2,641,803	-		PGA1_c25350	0.86	+0.4
2,641,865	+				+0.4
2,641,902	+				-0.1
2,641,902	+				-0.2
2,641,935	+				-2.2
2,641,935	+				+0.4
2,641,981	+				+0.2
2,641,981	+				+2.1
2,641,981	+				-0.4
2,641,981	+				-0.2
2,641,981	+				+0.1
2,641,989	-				-0.1
2,641,989	-				-0.6
2,641,989	-				+0.8
2,641,989	-				+0.5
2,641,989	-				+0.2
2,641,989	-				-1.1
2,641,989	-				-2.1
2,642,034	+				+1.7
2,642,034	+				+0.5
2,642,034	+				-1.7
2,642,034	+				+0.1
2,642,036	+				-1.2
2,642,042	-				-1.1
2,642,042	-				-1.8
2,642,042	-				-0.7
2,642,042	-				+0.2
2,642,042	-				-0.6
2,642,064	+				+0.5
2,642,082	+				-0.4
2,642,090	-				-0.9
2,642,098	+				-2.7
2,642,111	+				+2.4
2,642,129	-				-0.3
2,642,174	+		PGA1_c25360	0.13	-0.1
2,642,191	+		PGA1_c25360	0.14	+2.4
2,642,207	-		PGA1_c25360	0.15	-0.5
2,642,232	+		PGA1_c25360	0.17	-0.1
2,642,257	+		PGA1_c25360	0.19	-0.6
2,642,306	+		PGA1_c25360	0.23	+0.1
2,642,352	-		PGA1_c25360	0.27	+1.1
2,642,362	-		PGA1_c25360	0.28	-0.0
2,642,383	+		PGA1_c25360	0.30	-0.7
2,642,391	-		PGA1_c25360	0.31	-1.1
2,642,391	-		PGA1_c25360	0.31	+0.9
2,642,391	-		PGA1_c25360	0.31	-0.2
2,642,391	-		PGA1_c25360	0.31	+1.3
2,642,391	-		PGA1_c25360	0.31	+0.9
2,642,391	-		PGA1_c25360	0.31	-1.3
2,642,402	+		PGA1_c25360	0.31	+0.3
2,642,410	-		PGA1_c25360	0.32	+0.1
2,642,410	-		PGA1_c25360	0.32	+0.0
2,642,410	-		PGA1_c25360	0.32	-1.0
2,642,454	+		PGA1_c25360	0.36	+0.5
2,642,487	+		PGA1_c25360	0.38	-2.3
2,642,524	+		PGA1_c25360	0.42	-0.9
2,642,532	-		PGA1_c25360	0.42	-2.9
2,642,679	-		PGA1_c25360	0.54	+1.0
2,642,679	-		PGA1_c25360	0.54	+0.1
2,642,755	+		PGA1_c25360	0.61	+0.4
2,642,760	+		PGA1_c25360	0.61	+1.0
2,642,808	-		PGA1_c25360	0.65	-1.3
2,642,826	+		PGA1_c25360	0.67	-0.4
2,642,834	-		PGA1_c25360	0.67	-2.2
2,642,843	+		PGA1_c25360	0.68	-0.9