Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02280 and PGA1_c02290 are separated by 2 nucleotides PGA1_c02290 and PGA1_c02300 overlap by 8 nucleotides
PGA1_c02280: PGA1_c02280 - hypothetical protein, at 204,727 to 205,677
_c02280
PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477
_c02290
PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246
_c02300
Position (kb) 204
205
206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 203.744 kb on + strand at 203.826 kb on + strand at 203.840 kb on - strand at 203.888 kb on + strand at 203.902 kb on + strand at 203.951 kb on + strand at 204.022 kb on + strand at 204.033 kb on + strand at 204.072 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.098 kb on + strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.106 kb on - strand at 204.120 kb on + strand at 204.163 kb on - strand at 204.163 kb on - strand at 204.163 kb on - strand at 204.165 kb on + strand at 204.168 kb on - strand at 204.211 kb on + strand at 204.211 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.307 kb on - strand at 204.315 kb on - strand at 204.324 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.334 kb on + strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.342 kb on - strand at 204.346 kb on + strand at 204.354 kb on - strand at 204.356 kb on + strand at 204.356 kb on + strand at 204.364 kb on - strand at 204.439 kb on - strand at 204.441 kb on + strand at 204.445 kb on + strand at 204.447 kb on - strand at 204.447 kb on - strand at 204.463 kb on - strand at 204.485 kb on - strand at 204.494 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.495 kb on + strand at 204.497 kb on - strand at 204.503 kb on - strand at 204.503 kb on - strand at 204.543 kb on + strand at 204.552 kb on - strand at 204.554 kb on + strand at 204.605 kb on + strand at 204.625 kb on + strand at 204.630 kb on + strand at 204.668 kb on - strand at 204.668 kb on - strand at 204.749 kb on - strand at 204.794 kb on + strand at 204.803 kb on + strand at 204.811 kb on - strand at 204.821 kb on + strand at 204.845 kb on + strand, within PGA1_c02280 at 204.848 kb on - strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.887 kb on - strand, within PGA1_c02280 at 204.897 kb on - strand, within PGA1_c02280 at 204.908 kb on - strand, within PGA1_c02280 at 204.918 kb on - strand, within PGA1_c02280 at 204.939 kb on - strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.989 kb on + strand, within PGA1_c02280 at 204.994 kb on + strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.999 kb on + strand, within PGA1_c02280 at 205.017 kb on + strand, within PGA1_c02280 at 205.025 kb on - strand, within PGA1_c02280 at 205.059 kb on - strand, within PGA1_c02280 at 205.073 kb on - strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.131 kb on - strand, within PGA1_c02280 at 205.153 kb on + strand, within PGA1_c02280 at 205.208 kb on - strand, within PGA1_c02280 at 205.229 kb on + strand, within PGA1_c02280 at 205.247 kb on + strand, within PGA1_c02280 at 205.247 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.285 kb on + strand, within PGA1_c02280 at 205.290 kb on + strand, within PGA1_c02280 at 205.293 kb on - strand, within PGA1_c02280 at 205.294 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.362 kb on + strand, within PGA1_c02280 at 205.370 kb on - strand, within PGA1_c02280 at 205.376 kb on - strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.450 kb on + strand, within PGA1_c02280 at 205.455 kb on + strand, within PGA1_c02280 at 205.458 kb on - strand, within PGA1_c02280 at 205.463 kb on - strand, within PGA1_c02280 at 205.477 kb on + strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.485 kb on - strand, within PGA1_c02280 at 205.491 kb on + strand, within PGA1_c02280 at 205.548 kb on - strand, within PGA1_c02280 at 205.549 kb on - strand, within PGA1_c02280 at 205.578 kb on + strand, within PGA1_c02280 at 205.601 kb on + strand at 205.638 kb on - strand at 205.724 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.734 kb on - strand at 205.739 kb on - strand at 205.750 kb on + strand at 205.759 kb on - strand at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.807 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.815 kb on - strand, within PGA1_c02290 at 205.820 kb on - strand, within PGA1_c02290 at 205.836 kb on - strand, within PGA1_c02290 at 205.864 kb on + strand, within PGA1_c02290 at 205.882 kb on - strand, within PGA1_c02290 at 205.888 kb on + strand, within PGA1_c02290 at 205.960 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 206.008 kb on + strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.074 kb on + strand, within PGA1_c02290 at 206.077 kb on - strand, within PGA1_c02290 at 206.096 kb on + strand, within PGA1_c02290 at 206.179 kb on + strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.232 kb on - strand, within PGA1_c02290 at 206.239 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.306 kb on + strand, within PGA1_c02290 at 206.319 kb on + strand, within PGA1_c02290 at 206.436 kb on - strand at 206.441 kb on - strand at 206.445 kb on - strand at 206.448 kb on + strand at 206.449 kb on + strand at 206.502 kb on + strand at 206.523 kb on + strand at 206.526 kb on - strand at 206.531 kb on - strand at 206.531 kb on - strand at 206.538 kb on - strand at 206.571 kb on + strand, within PGA1_c02300 at 206.575 kb on - strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.600 kb on + strand, within PGA1_c02300 at 206.603 kb on + strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 203,744 + +1.1 203,826 + -3.1 203,840 - -0.7 203,888 + +0.4 203,902 + +1.3 203,951 + -0.9 204,022 + -1.2 204,033 + +0.4 204,072 + +1.1 204,098 + +0.2 204,098 + -0.1 204,098 + +2.3 204,098 + -0.5 204,106 - -0.3 204,106 - -0.6 204,106 - -0.3 204,106 - -1.9 204,106 - +1.3 204,106 - +0.0 204,120 + +1.3 204,163 - -0.4 204,163 - -0.1 204,163 - +0.8 204,165 + +0.1 204,168 - +1.1 204,211 + +0.3 204,211 + -0.9 204,251 + +0.3 204,251 + -0.8 204,307 - -1.1 204,315 - -0.7 204,324 + -0.1 204,334 + -0.7 204,334 + -1.1 204,334 + +1.8 204,334 + -0.2 204,334 + -0.3 204,342 - +1.4 204,342 - -0.4 204,342 - -0.2 204,342 - -1.9 204,346 + +0.3 204,354 - +4.0 204,356 + +1.6 204,356 + +1.5 204,364 - -1.7 204,439 - +0.6 204,441 + -1.5 204,445 + +0.3 204,447 - +0.9 204,447 - -1.6 204,463 - -0.6 204,485 - -1.4 204,494 + -1.2 204,495 + +0.1 204,495 + -0.5 204,495 + +0.3 204,495 + +0.1 204,495 + -0.1 204,495 + -0.0 204,495 + +0.7 204,497 - +0.8 204,503 - -0.6 204,503 - +1.8 204,543 + +1.0 204,552 - +0.5 204,554 + +0.1 204,605 + +0.5 204,625 + -0.2 204,630 + -0.5 204,668 - +1.1 204,668 - +1.2 204,749 - -0.0 204,794 + +0.4 204,803 + +1.3 204,811 - -0.3 204,821 + -1.5 204,845 + PGA1_c02280 0.12 -0.6 204,848 - PGA1_c02280 0.13 +2.3 204,852 + PGA1_c02280 0.13 +0.6 204,852 + PGA1_c02280 0.13 -1.1 204,852 + PGA1_c02280 0.13 -0.4 204,887 - PGA1_c02280 0.17 -1.5 204,897 - PGA1_c02280 0.18 -0.3 204,908 - PGA1_c02280 0.19 -0.9 204,918 - PGA1_c02280 0.20 -2.2 204,939 - PGA1_c02280 0.22 +1.0 204,952 + PGA1_c02280 0.24 +3.3 204,952 + PGA1_c02280 0.24 -1.3 204,952 + PGA1_c02280 0.24 +2.1 204,960 - PGA1_c02280 0.25 +0.3 204,960 - PGA1_c02280 0.25 -0.4 204,960 - PGA1_c02280 0.25 +1.2 204,989 + PGA1_c02280 0.28 -2.3 204,994 + PGA1_c02280 0.28 -0.7 204,997 - PGA1_c02280 0.28 +1.8 204,997 - PGA1_c02280 0.28 +1.6 204,999 + PGA1_c02280 0.29 +0.8 205,017 + PGA1_c02280 0.30 -2.2 205,025 - PGA1_c02280 0.31 +0.5 205,059 - PGA1_c02280 0.35 -1.2 205,073 - PGA1_c02280 0.36 -0.5 205,118 + PGA1_c02280 0.41 +0.9 205,118 + PGA1_c02280 0.41 -0.6 205,118 + PGA1_c02280 0.41 +0.3 205,118 + PGA1_c02280 0.41 +0.7 205,126 - PGA1_c02280 0.42 -0.4 205,126 - PGA1_c02280 0.42 +0.3 205,126 - PGA1_c02280 0.42 +1.1 205,126 - PGA1_c02280 0.42 -1.3 205,126 - PGA1_c02280 0.42 +0.7 205,126 - PGA1_c02280 0.42 -0.7 205,131 - PGA1_c02280 0.42 +0.5 205,153 + PGA1_c02280 0.45 +1.7 205,208 - PGA1_c02280 0.51 +0.8 205,229 + PGA1_c02280 0.53 +0.7 205,247 + PGA1_c02280 0.55 -2.4 205,247 - PGA1_c02280 0.55 -0.3 205,255 - PGA1_c02280 0.56 -0.3 205,255 - PGA1_c02280 0.56 +0.4 205,255 - PGA1_c02280 0.56 +1.4 205,285 + PGA1_c02280 0.59 -2.2 205,290 + PGA1_c02280 0.59 -1.7 205,293 - PGA1_c02280 0.60 -0.9 205,294 - PGA1_c02280 0.60 +0.4 205,298 - PGA1_c02280 0.60 -0.3 205,298 - PGA1_c02280 0.60 -0.2 205,298 - PGA1_c02280 0.60 +1.1 205,298 - PGA1_c02280 0.60 -0.8 205,313 + PGA1_c02280 0.62 +0.7 205,313 + PGA1_c02280 0.62 +1.0 205,313 + PGA1_c02280 0.62 -0.0 205,321 - PGA1_c02280 0.62 -1.7 205,321 - PGA1_c02280 0.62 +1.5 205,362 + PGA1_c02280 0.67 +0.9 205,370 - PGA1_c02280 0.68 -0.5 205,376 - PGA1_c02280 0.68 +1.3 205,410 + PGA1_c02280 0.72 +1.5 205,410 + PGA1_c02280 0.72 -0.4 205,410 + PGA1_c02280 0.72 +2.4 205,410 + PGA1_c02280 0.72 +0.1 205,410 + PGA1_c02280 0.72 +0.7 205,410 + PGA1_c02280 0.72 -1.2 205,410 + PGA1_c02280 0.72 +0.8 205,410 + PGA1_c02280 0.72 +0.0 205,410 + PGA1_c02280 0.72 +1.9 205,410 + PGA1_c02280 0.72 +0.9 205,418 - PGA1_c02280 0.73 +0.1 205,418 - PGA1_c02280 0.73 +1.5 205,418 - PGA1_c02280 0.73 -0.5 205,418 - PGA1_c02280 0.73 +0.5 205,418 - PGA1_c02280 0.73 -0.0 205,450 + PGA1_c02280 0.76 +0.8 205,455 + PGA1_c02280 0.77 +0.8 205,458 - PGA1_c02280 0.77 +0.3 205,463 - PGA1_c02280 0.77 -0.9 205,477 + PGA1_c02280 0.79 -1.7 205,483 - PGA1_c02280 0.79 -0.2 205,483 - PGA1_c02280 0.79 +1.3 205,485 - PGA1_c02280 0.80 +0.6 205,491 + PGA1_c02280 0.80 +1.6 205,548 - PGA1_c02280 0.86 +0.1 205,549 - PGA1_c02280 0.86 +0.5 205,578 + PGA1_c02280 0.89 +0.6 205,601 + +0.7 205,638 - +0.1 205,724 + -1.4 205,731 + -1.1 205,731 + -0.2 205,731 + -0.3 205,734 - -1.2 205,739 - -2.3 205,750 + -0.9 205,759 - -1.6 205,783 + PGA1_c02290 0.13 +1.7 205,783 + PGA1_c02290 0.13 +0.2 205,783 + PGA1_c02290 0.13 +0.8 205,788 + PGA1_c02290 0.14 -1.1 205,788 + PGA1_c02290 0.14 -0.2 205,791 - PGA1_c02290 0.14 +0.6 205,791 - PGA1_c02290 0.14 +0.4 205,796 - PGA1_c02290 0.15 -0.2 205,796 - PGA1_c02290 0.15 -1.1 205,807 + PGA1_c02290 0.16 +0.5 205,812 + PGA1_c02290 0.17 -1.9 205,812 + PGA1_c02290 0.17 +0.3 205,812 + PGA1_c02290 0.17 -1.3 205,815 - PGA1_c02290 0.17 -1.5 205,820 - PGA1_c02290 0.18 +0.5 205,836 - PGA1_c02290 0.20 -0.7 205,864 + PGA1_c02290 0.23 +1.9 205,882 - PGA1_c02290 0.25 -1.6 205,888 + PGA1_c02290 0.26 +0.6 205,960 + PGA1_c02290 0.35 -1.5 205,994 + PGA1_c02290 0.39 -0.1 205,994 + PGA1_c02290 0.39 -1.1 206,008 + PGA1_c02290 0.41 -0.3 206,012 - PGA1_c02290 0.42 +1.9 206,012 - PGA1_c02290 0.42 -0.7 206,074 + PGA1_c02290 0.49 +0.1 206,077 - PGA1_c02290 0.50 +0.5 206,096 + PGA1_c02290 0.52 +0.6 206,179 + PGA1_c02290 0.63 +0.7 206,215 - PGA1_c02290 0.67 +0.1 206,215 - PGA1_c02290 0.67 +0.3 206,232 - PGA1_c02290 0.69 +0.4 206,239 + PGA1_c02290 0.70 -0.5 206,270 + PGA1_c02290 0.74 -2.1 206,270 + PGA1_c02290 0.74 -1.3 206,278 - PGA1_c02290 0.75 +1.1 206,278 - PGA1_c02290 0.75 +0.5 206,278 - PGA1_c02290 0.75 -1.3 206,278 - PGA1_c02290 0.75 +0.4 206,278 - PGA1_c02290 0.75 +0.9 206,278 - PGA1_c02290 0.75 +0.7 206,306 + PGA1_c02290 0.78 -0.4 206,319 + PGA1_c02290 0.80 -0.4 206,436 - +0.4 206,441 - -1.9 206,445 - -0.9 206,448 + +1.7 206,449 + +0.3 206,502 + -1.2 206,523 + +0.5 206,526 - -1.3 206,531 - -1.3 206,531 - +1.8 206,538 - -0.7 206,571 + PGA1_c02300 0.13 -0.9 206,575 - PGA1_c02300 0.14 -0.6 206,586 + PGA1_c02300 0.15 -1.2 206,586 + PGA1_c02300 0.15 -1.6 206,600 + PGA1_c02300 0.17 +1.0 206,603 + PGA1_c02300 0.17 -2.1 206,608 - PGA1_c02300 0.18 -1.7 206,608 - PGA1_c02300 0.18 -0.9
Or see this region's nucleotide sequence