Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21920 and PGA1_c21930 are separated by 125 nucleotides PGA1_c21930 and PGA1_c21940 are separated by 440 nucleotides
PGA1_c21920: PGA1_c21920 - Integral membrane protein, interacts with FtsH, at 2,273,783 to 2,274,559
_c21920
PGA1_c21930: PGA1_c21930 - acetyltransferase domain-containing protein, at 2,274,685 to 2,275,158
_c21930
PGA1_c21940: PGA1_c21940 - 50S ribosomal protein L33, at 2,275,599 to 2,275,766
_c21940
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.727 kb on - strand at 2273.866 kb on + strand, within PGA1_c21920 at 2273.950 kb on + strand, within PGA1_c21920 at 2273.963 kb on + strand, within PGA1_c21920 at 2274.688 kb on + strand at 2274.832 kb on - strand, within PGA1_c21930 at 2274.869 kb on + strand, within PGA1_c21930 at 2274.881 kb on + strand, within PGA1_c21930 at 2274.929 kb on - strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.948 kb on - strand, within PGA1_c21930 at 2275.021 kb on + strand, within PGA1_c21930 at 2275.021 kb on + strand, within PGA1_c21930 at 2275.042 kb on + strand, within PGA1_c21930 at 2275.070 kb on + strand, within PGA1_c21930 at 2275.078 kb on + strand, within PGA1_c21930 at 2275.078 kb on + strand, within PGA1_c21930 at 2275.078 kb on - strand, within PGA1_c21930 at 2275.163 kb on + strand at 2275.171 kb on - strand at 2275.171 kb on - strand at 2275.286 kb on + strand at 2275.298 kb on + strand at 2275.306 kb on - strand at 2275.321 kb on + strand at 2275.356 kb on + strand at 2275.369 kb on + strand at 2275.375 kb on + strand at 2275.379 kb on + strand at 2275.379 kb on + strand at 2275.486 kb on - strand at 2275.491 kb on - strand at 2275.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 2,273,686 - +1.2 2,273,686 - +1.3 2,273,686 - -1.2 2,273,686 - +0.0 2,273,727 - +2.0 2,273,866 + PGA1_c21920 0.11 +0.4 2,273,950 + PGA1_c21920 0.21 +0.4 2,273,963 + PGA1_c21920 0.23 -0.6 2,274,688 + -1.5 2,274,832 - PGA1_c21930 0.31 +1.2 2,274,869 + PGA1_c21930 0.39 -2.1 2,274,881 + PGA1_c21930 0.41 -0.8 2,274,929 - PGA1_c21930 0.51 +0.1 2,274,940 + PGA1_c21930 0.54 -0.6 2,274,940 + PGA1_c21930 0.54 -0.5 2,274,940 + PGA1_c21930 0.54 -1.5 2,274,940 + PGA1_c21930 0.54 -1.5 2,274,940 + PGA1_c21930 0.54 -0.5 2,274,948 - PGA1_c21930 0.55 +0.6 2,275,021 + PGA1_c21930 0.71 -0.5 2,275,021 + PGA1_c21930 0.71 -1.2 2,275,042 + PGA1_c21930 0.75 -1.7 2,275,070 + PGA1_c21930 0.81 +0.5 2,275,078 + PGA1_c21930 0.83 -2.2 2,275,078 + PGA1_c21930 0.83 +1.6 2,275,078 - PGA1_c21930 0.83 -0.6 2,275,163 + -1.6 2,275,171 - +0.8 2,275,171 - -1.2 2,275,286 + +1.3 2,275,298 + +1.4 2,275,306 - +0.1 2,275,321 + -0.6 2,275,356 + -0.6 2,275,369 + -0.5 2,275,375 + +0.4 2,275,379 + +0.4 2,275,379 + -0.2 2,275,486 - -0.7 2,275,491 - +1.5 2,275,540 - +0.1
Or see this region's nucleotide sequence