Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21930

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21920 and PGA1_c21930 are separated by 125 nucleotidesPGA1_c21930 and PGA1_c21940 are separated by 440 nucleotides PGA1_c21920: PGA1_c21920 - Integral membrane protein, interacts with FtsH, at 2,273,783 to 2,274,559 _c21920 PGA1_c21930: PGA1_c21930 - acetyltransferase domain-containing protein, at 2,274,685 to 2,275,158 _c21930 PGA1_c21940: PGA1_c21940 - 50S ribosomal protein L33, at 2,275,599 to 2,275,766 _c21940 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -2 -1 0 1 2at 2273.686 kb on - strandat 2273.686 kb on - strandat 2273.686 kb on - strandat 2273.686 kb on - strandat 2273.727 kb on - strandat 2273.866 kb on + strand, within PGA1_c21920at 2273.950 kb on + strand, within PGA1_c21920at 2273.963 kb on + strand, within PGA1_c21920at 2274.688 kb on + strandat 2274.832 kb on - strand, within PGA1_c21930at 2274.869 kb on + strand, within PGA1_c21930at 2274.881 kb on + strand, within PGA1_c21930at 2274.929 kb on - strand, within PGA1_c21930at 2274.940 kb on + strand, within PGA1_c21930at 2274.940 kb on + strand, within PGA1_c21930at 2274.940 kb on + strand, within PGA1_c21930at 2274.940 kb on + strand, within PGA1_c21930at 2274.940 kb on + strand, within PGA1_c21930at 2274.948 kb on - strand, within PGA1_c21930at 2275.021 kb on + strand, within PGA1_c21930at 2275.021 kb on + strand, within PGA1_c21930at 2275.042 kb on + strand, within PGA1_c21930at 2275.070 kb on + strand, within PGA1_c21930at 2275.078 kb on + strand, within PGA1_c21930at 2275.078 kb on + strand, within PGA1_c21930at 2275.078 kb on - strand, within PGA1_c21930at 2275.163 kb on + strandat 2275.171 kb on - strandat 2275.171 kb on - strandat 2275.286 kb on + strandat 2275.298 kb on + strandat 2275.306 kb on - strandat 2275.321 kb on + strandat 2275.356 kb on + strandat 2275.369 kb on + strandat 2275.375 kb on + strandat 2275.379 kb on + strandat 2275.379 kb on + strandat 2275.486 kb on - strandat 2275.491 kb on - strandat 2275.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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2,273,686 - +1.2
2,273,686 - +1.3
2,273,686 - -1.2
2,273,686 - +0.0
2,273,727 - +2.0
2,273,866 + PGA1_c21920 0.11 +0.4
2,273,950 + PGA1_c21920 0.21 +0.4
2,273,963 + PGA1_c21920 0.23 -0.6
2,274,688 + -1.5
2,274,832 - PGA1_c21930 0.31 +1.2
2,274,869 + PGA1_c21930 0.39 -2.1
2,274,881 + PGA1_c21930 0.41 -0.8
2,274,929 - PGA1_c21930 0.51 +0.1
2,274,940 + PGA1_c21930 0.54 -0.6
2,274,940 + PGA1_c21930 0.54 -0.5
2,274,940 + PGA1_c21930 0.54 -1.5
2,274,940 + PGA1_c21930 0.54 -1.5
2,274,940 + PGA1_c21930 0.54 -0.5
2,274,948 - PGA1_c21930 0.55 +0.6
2,275,021 + PGA1_c21930 0.71 -0.5
2,275,021 + PGA1_c21930 0.71 -1.2
2,275,042 + PGA1_c21930 0.75 -1.7
2,275,070 + PGA1_c21930 0.81 +0.5
2,275,078 + PGA1_c21930 0.83 -2.2
2,275,078 + PGA1_c21930 0.83 +1.6
2,275,078 - PGA1_c21930 0.83 -0.6
2,275,163 + -1.6
2,275,171 - +0.8
2,275,171 - -1.2
2,275,286 + +1.3
2,275,298 + +1.4
2,275,306 - +0.1
2,275,321 + -0.6
2,275,356 + -0.6
2,275,369 + -0.5
2,275,375 + +0.4
2,275,379 + +0.4
2,275,379 + -0.2
2,275,486 - -0.7
2,275,491 - +1.5
2,275,540 - +0.1

Or see this region's nucleotide sequence