Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides PGA1_c01930 and PGA1_c01940 are separated by 135 nucleotides PGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides
PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079
_c01920
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920
_c01940
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
Position (kb) 176
177
178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 175.117 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.188 kb on + strand, within PGA1_c01920 at 175.259 kb on + strand, within PGA1_c01920 at 175.266 kb on - strand, within PGA1_c01920 at 175.288 kb on - strand, within PGA1_c01920 at 175.310 kb on - strand, within PGA1_c01920 at 175.487 kb on - strand, within PGA1_c01920 at 175.498 kb on - strand, within PGA1_c01920 at 175.529 kb on + strand, within PGA1_c01920 at 175.702 kb on + strand, within PGA1_c01920 at 175.737 kb on + strand, within PGA1_c01920 at 175.738 kb on - strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.801 kb on - strand, within PGA1_c01920 at 175.870 kb on + strand, within PGA1_c01920 at 175.885 kb on - strand, within PGA1_c01920 at 175.928 kb on + strand, within PGA1_c01920 at 175.982 kb on + strand at 176.042 kb on + strand at 176.140 kb on - strand at 176.247 kb on + strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.345 kb on + strand, within PGA1_c01930 at 176.431 kb on - strand, within PGA1_c01930 at 176.506 kb on - strand, within PGA1_c01930 at 176.538 kb on - strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930 at 177.177 kb on + strand, within PGA1_c01930 at 177.224 kb on + strand, within PGA1_c01930 at 177.233 kb on - strand, within PGA1_c01930 at 177.320 kb on - strand at 177.393 kb on + strand at 177.431 kb on - strand at 177.564 kb on + strand at 177.564 kb on + strand at 177.633 kb on - strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.728 kb on - strand, within PGA1_c01940
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 175,117 + PGA1_c01920 0.31 -1.9 175,133 + PGA1_c01920 0.32 -2.4 175,133 + PGA1_c01920 0.32 -1.5 175,133 + PGA1_c01920 0.32 -2.9 175,133 + PGA1_c01920 0.32 -3.0 175,133 + PGA1_c01920 0.32 -2.4 175,133 + PGA1_c01920 0.32 -3.4 175,133 + PGA1_c01920 0.32 -2.8 175,141 - PGA1_c01920 0.33 -2.3 175,141 - PGA1_c01920 0.33 -2.2 175,141 - PGA1_c01920 0.33 -3.1 175,141 - PGA1_c01920 0.33 -1.4 175,141 - PGA1_c01920 0.33 -2.4 175,141 - PGA1_c01920 0.33 -0.7 175,141 - PGA1_c01920 0.33 -2.2 175,141 - PGA1_c01920 0.33 -2.4 175,141 - PGA1_c01920 0.33 -1.3 175,188 + PGA1_c01920 0.36 -1.2 175,259 + PGA1_c01920 0.41 -1.9 175,266 - PGA1_c01920 0.42 -2.0 175,288 - PGA1_c01920 0.43 -2.3 175,310 - PGA1_c01920 0.45 -2.7 175,487 - PGA1_c01920 0.58 -2.5 175,498 - PGA1_c01920 0.58 -3.1 175,529 + PGA1_c01920 0.61 -3.6 175,702 + PGA1_c01920 0.73 -3.4 175,737 + PGA1_c01920 0.75 -3.5 175,738 - PGA1_c01920 0.76 -2.5 175,793 + PGA1_c01920 0.79 -2.4 175,793 + PGA1_c01920 0.79 -2.2 175,801 - PGA1_c01920 0.80 -1.5 175,870 + PGA1_c01920 0.85 -0.7 175,885 - PGA1_c01920 0.86 -1.7 175,928 + PGA1_c01920 0.89 -2.7 175,982 + -3.1 176,042 + -2.1 176,140 - -1.6 176,247 + PGA1_c01930 0.12 -2.9 176,336 - PGA1_c01930 0.19 -2.4 176,336 - PGA1_c01930 0.19 +1.3 176,345 + PGA1_c01930 0.20 -1.5 176,431 - PGA1_c01930 0.26 -2.7 176,506 - PGA1_c01930 0.32 +0.3 176,538 - PGA1_c01930 0.34 -1.1 176,562 + PGA1_c01930 0.36 -3.1 176,562 + PGA1_c01930 0.36 -2.4 176,562 + PGA1_c01930 0.36 -0.7 176,562 + PGA1_c01930 0.36 -1.5 176,562 + PGA1_c01930 0.36 -0.3 176,562 + PGA1_c01930 0.36 -2.8 176,570 - PGA1_c01930 0.37 -2.3 176,570 - PGA1_c01930 0.37 -1.1 176,579 + PGA1_c01930 0.38 -1.1 176,651 - PGA1_c01930 0.43 -2.1 176,656 + PGA1_c01930 0.43 -2.3 176,789 - PGA1_c01930 0.53 -2.7 176,861 + PGA1_c01930 0.59 -3.2 176,869 - PGA1_c01930 0.59 -2.1 176,869 - PGA1_c01930 0.59 -3.9 176,869 - PGA1_c01930 0.59 -1.5 176,869 - PGA1_c01930 0.59 -0.7 176,869 - PGA1_c01930 0.59 -4.0 176,869 - PGA1_c01930 0.59 -1.9 176,869 - PGA1_c01930 0.59 +0.1 176,878 + PGA1_c01930 0.60 +0.1 176,878 + PGA1_c01930 0.60 -1.7 176,878 + PGA1_c01930 0.60 +2.3 176,886 - PGA1_c01930 0.61 -1.5 176,886 - PGA1_c01930 0.61 -1.8 176,900 + PGA1_c01930 0.62 -3.1 177,031 - PGA1_c01930 0.72 +1.3 177,034 + PGA1_c01930 0.72 -1.9 177,074 + PGA1_c01930 0.75 -2.5 177,177 + PGA1_c01930 0.83 -1.3 177,224 + PGA1_c01930 0.86 -2.1 177,233 - PGA1_c01930 0.87 -3.1 177,320 - -1.9 177,393 + -3.4 177,431 - +0.0 177,564 + -0.9 177,564 + +1.3 177,633 - PGA1_c01940 0.24 +1.0 177,720 + PGA1_c01940 0.47 -0.5 177,720 + PGA1_c01940 0.47 -0.5 177,720 + PGA1_c01940 0.47 +0.5 177,728 - PGA1_c01940 0.49 +1.3
Or see this region's nucleotide sequence