Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01820

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01810 and PGA1_c01820 are separated by 80 nucleotidesPGA1_c01820 and PGA1_c01830 are separated by 147 nucleotidesPGA1_c01830 and PGA1_c01840 are separated by 593 nucleotides PGA1_c01810: PGA1_c01810 - putative transcriptional regulator, GntR family, at 164,896 to 166,308 _c01810 PGA1_c01820: PGA1_c01820 - Predicted permeases, at 166,389 to 167,333 _c01820 PGA1_c01830: PGA1_c01830 - Uncharacterized conserved small protein, at 167,481 to 167,696 _c01830 PGA1_c01840: PGA1_c01840 - transmembrane ion channel-domain containing protein, at 168,290 to 168,802 _c01840 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.432 kb on + strand, within PGA1_c01810at 165.458 kb on - strand, within PGA1_c01810at 165.458 kb on - strand, within PGA1_c01810at 165.464 kb on + strand, within PGA1_c01810at 165.498 kb on + strand, within PGA1_c01810at 165.498 kb on + strand, within PGA1_c01810at 165.565 kb on + strand, within PGA1_c01810at 165.589 kb on - strand, within PGA1_c01810at 165.622 kb on - strand, within PGA1_c01810at 165.622 kb on - strand, within PGA1_c01810at 165.714 kb on + strand, within PGA1_c01810at 165.752 kb on + strand, within PGA1_c01810at 165.760 kb on - strand, within PGA1_c01810at 165.778 kb on + strand, within PGA1_c01810at 165.778 kb on + strand, within PGA1_c01810at 165.781 kb on - strand, within PGA1_c01810at 165.786 kb on - strand, within PGA1_c01810at 165.839 kb on + strand, within PGA1_c01810at 165.934 kb on - strand, within PGA1_c01810at 165.979 kb on - strand, within PGA1_c01810at 166.008 kb on + strand, within PGA1_c01810at 166.008 kb on + strand, within PGA1_c01810at 166.016 kb on - strand, within PGA1_c01810at 166.031 kb on + strand, within PGA1_c01810at 166.041 kb on - strand, within PGA1_c01810at 166.041 kb on - strand, within PGA1_c01810at 166.082 kb on - strand, within PGA1_c01810at 166.179 kb on + strandat 166.187 kb on - strandat 166.187 kb on - strandat 166.341 kb on - strandat 166.388 kb on - strandat 166.413 kb on - strandat 166.449 kb on + strandat 166.451 kb on + strandat 166.459 kb on - strandat 166.477 kb on + strandat 166.494 kb on - strand, within PGA1_c01820at 166.513 kb on + strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.546 kb on - strand, within PGA1_c01820at 166.555 kb on + strand, within PGA1_c01820at 166.590 kb on - strand, within PGA1_c01820at 166.592 kb on - strand, within PGA1_c01820at 166.660 kb on + strand, within PGA1_c01820at 166.686 kb on - strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.703 kb on + strand, within PGA1_c01820at 166.739 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.758 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.795 kb on + strand, within PGA1_c01820at 166.821 kb on - strand, within PGA1_c01820at 166.831 kb on - strand, within PGA1_c01820at 166.835 kb on + strand, within PGA1_c01820at 166.929 kb on - strand, within PGA1_c01820at 166.942 kb on + strand, within PGA1_c01820at 166.972 kb on - strand, within PGA1_c01820at 166.979 kb on + strand, within PGA1_c01820at 166.983 kb on + strand, within PGA1_c01820at 166.996 kb on - strand, within PGA1_c01820at 167.026 kb on + strand, within PGA1_c01820at 167.040 kb on - strand, within PGA1_c01820at 167.049 kb on + strand, within PGA1_c01820at 167.063 kb on - strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.165 kb on + strand, within PGA1_c01820at 167.191 kb on - strand, within PGA1_c01820at 167.193 kb on + strand, within PGA1_c01820at 167.196 kb on - strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.309 kb on - strandat 167.319 kb on - strandat 167.353 kb on - strandat 167.366 kb on + strandat 167.366 kb on + strandat 167.471 kb on + strandat 167.487 kb on - strandat 167.528 kb on - strand, within PGA1_c01830at 167.558 kb on + strand, within PGA1_c01830at 167.593 kb on - strand, within PGA1_c01830at 167.596 kb on + strand, within PGA1_c01830at 167.623 kb on - strand, within PGA1_c01830at 167.744 kb on + strandat 167.910 kb on + strandat 167.929 kb on + strandat 167.942 kb on - strandat 167.952 kb on + strandat 167.960 kb on - strandat 167.960 kb on - strandat 167.960 kb on - strandat 168.018 kb on - strandat 168.042 kb on + strandat 168.048 kb on + strandat 168.048 kb on + strandat 168.089 kb on - strandat 168.089 kb on - strandat 168.113 kb on + strandat 168.113 kb on + strandat 168.113 kb on + strandat 168.115 kb on + strandat 168.121 kb on - strandat 168.123 kb on - strandat 168.138 kb on - strandat 168.219 kb on + strandat 168.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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165,432 + PGA1_c01810 0.38 +0.6
165,458 - PGA1_c01810 0.40 -0.9
165,458 - PGA1_c01810 0.40 -0.2
165,464 + PGA1_c01810 0.40 -2.2
165,498 + PGA1_c01810 0.43 +1.3
165,498 + PGA1_c01810 0.43 -2.1
165,565 + PGA1_c01810 0.47 +1.0
165,589 - PGA1_c01810 0.49 -1.2
165,622 - PGA1_c01810 0.51 -1.0
165,622 - PGA1_c01810 0.51 +0.6
165,714 + PGA1_c01810 0.58 -1.7
165,752 + PGA1_c01810 0.61 -0.7
165,760 - PGA1_c01810 0.61 +0.5
165,778 + PGA1_c01810 0.62 -1.5
165,778 + PGA1_c01810 0.62 -0.3
165,781 - PGA1_c01810 0.63 +1.3
165,786 - PGA1_c01810 0.63 -1.3
165,839 + PGA1_c01810 0.67 +0.7
165,934 - PGA1_c01810 0.73 +1.0
165,979 - PGA1_c01810 0.77 -1.1
166,008 + PGA1_c01810 0.79 +0.7
166,008 + PGA1_c01810 0.79 +1.6
166,016 - PGA1_c01810 0.79 -0.1
166,031 + PGA1_c01810 0.80 -0.5
166,041 - PGA1_c01810 0.81 +1.5
166,041 - PGA1_c01810 0.81 +0.7
166,082 - PGA1_c01810 0.84 -0.6
166,179 + -1.9
166,187 - -0.9
166,187 - +0.6
166,341 - -0.8
166,388 - -2.1
166,413 - -1.3
166,449 + -2.3
166,451 + +0.3
166,459 - -2.0
166,477 + +0.3
166,494 - PGA1_c01820 0.11 +1.0
166,513 + PGA1_c01820 0.13 +1.3
166,521 - PGA1_c01820 0.14 -1.3
166,521 - PGA1_c01820 0.14 -0.3
166,546 - PGA1_c01820 0.17 +0.4
166,555 + PGA1_c01820 0.18 -0.2
166,590 - PGA1_c01820 0.21 +2.1
166,592 - PGA1_c01820 0.21 +1.1
166,660 + PGA1_c01820 0.29 -0.5
166,686 - PGA1_c01820 0.31 +1.0
166,693 + PGA1_c01820 0.32 -1.7
166,693 + PGA1_c01820 0.32 +0.8
166,701 - PGA1_c01820 0.33 +1.0
166,701 - PGA1_c01820 0.33 +0.4
166,703 + PGA1_c01820 0.33 -1.1
166,739 - PGA1_c01820 0.37 +0.6
166,744 - PGA1_c01820 0.38 -0.2
166,744 - PGA1_c01820 0.38 -0.3
166,744 - PGA1_c01820 0.38 +0.9
166,758 - PGA1_c01820 0.39 +0.4
166,766 - PGA1_c01820 0.40 +0.5
166,766 - PGA1_c01820 0.40 +1.3
166,795 + PGA1_c01820 0.43 +0.3
166,821 - PGA1_c01820 0.46 -1.4
166,831 - PGA1_c01820 0.47 +0.1
166,835 + PGA1_c01820 0.47 -2.3
166,929 - PGA1_c01820 0.57 +1.5
166,942 + PGA1_c01820 0.59 -1.9
166,972 - PGA1_c01820 0.62 +2.1
166,979 + PGA1_c01820 0.62 +0.1
166,983 + PGA1_c01820 0.63 +0.1
166,996 - PGA1_c01820 0.64 +1.3
167,026 + PGA1_c01820 0.67 +0.7
167,040 - PGA1_c01820 0.69 -2.6
167,049 + PGA1_c01820 0.70 +2.1
167,063 - PGA1_c01820 0.71 -2.3
167,132 + PGA1_c01820 0.79 -0.3
167,132 + PGA1_c01820 0.79 +0.7
167,132 + PGA1_c01820 0.79 +0.7
167,140 - PGA1_c01820 0.79 -0.1
167,140 - PGA1_c01820 0.79 +0.4
167,140 - PGA1_c01820 0.79 +0.8
167,165 + PGA1_c01820 0.82 -0.3
167,191 - PGA1_c01820 0.85 +1.0
167,193 + PGA1_c01820 0.85 +1.1
167,196 - PGA1_c01820 0.85 +1.0
167,233 + PGA1_c01820 0.89 +1.7
167,233 + PGA1_c01820 0.89 -0.8
167,233 + PGA1_c01820 0.89 +0.8
167,301 + +0.8
167,301 + -0.3
167,301 + -1.6
167,301 + -1.7
167,301 + +0.6
167,301 + +0.1
167,309 - -3.2
167,309 - -2.0
167,309 - -0.5
167,309 - -1.9
167,319 - -0.3
167,353 - +2.0
167,366 + +0.9
167,366 + +0.5
167,471 + -0.9
167,487 - -1.9
167,528 - PGA1_c01830 0.22 +0.0
167,558 + PGA1_c01830 0.36 +0.6
167,593 - PGA1_c01830 0.52 -0.1
167,596 + PGA1_c01830 0.53 -0.5
167,623 - PGA1_c01830 0.66 +0.6
167,744 + -0.7
167,910 + +1.1
167,929 + +1.4
167,942 - +1.1
167,952 + -1.2
167,960 - -0.2
167,960 - -1.5
167,960 - +0.5
168,018 - +0.4
168,042 + +0.1
168,048 + +0.5
168,048 + +0.4
168,089 - +0.8
168,089 - -1.7
168,113 + +1.0
168,113 + -1.0
168,113 + -0.9
168,115 + -3.7
168,121 - -0.1
168,123 - +0.5
168,138 - +0.1
168,219 + -1.0
168,272 + +2.0

Or see this region's nucleotide sequence