Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16550

Experiment: m.b. methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. methylglyoxal 0.008 vol%
1,715,782	-				+0.4
1,715,885	+		PGA1_c16540	0.14	+0.3
1,715,885	+		PGA1_c16540	0.14	-1.1
1,715,890	+		PGA1_c16540	0.15	-1.1
1,715,898	-		PGA1_c16540	0.15	+2.1
1,715,900	+		PGA1_c16540	0.16	-0.7
1,715,903	-		PGA1_c16540	0.16	-1.7
1,715,928	-		PGA1_c16540	0.18	-0.1
1,715,928	-		PGA1_c16540	0.18	-1.4
1,715,964	-		PGA1_c16540	0.22	+0.3
1,716,073	+		PGA1_c16540	0.33	-0.1
1,716,078	-		PGA1_c16540	0.34	-0.1
1,716,081	-		PGA1_c16540	0.34	-0.7
1,716,081	-		PGA1_c16540	0.34	+1.1
1,716,101	-		PGA1_c16540	0.36	+0.3
1,716,145	-		PGA1_c16540	0.40	-0.1
1,716,145	-		PGA1_c16540	0.40	+0.2
1,716,245	-		PGA1_c16540	0.51	+0.9
1,716,245	-		PGA1_c16540	0.51	-1.4
1,716,281	+		PGA1_c16540	0.54	-0.1
1,716,289	-		PGA1_c16540	0.55	-1.0
1,716,289	-		PGA1_c16540	0.55	+0.7
1,716,289	-		PGA1_c16540	0.55	+0.3
1,716,337	-		PGA1_c16540	0.60	-1.9
1,716,363	-		PGA1_c16540	0.63	-1.9
1,716,363	-		PGA1_c16540	0.63	-0.8
1,716,460	+		PGA1_c16540	0.72	+0.3
1,716,556	+		PGA1_c16540	0.82	+1.5
1,716,557	+		PGA1_c16540	0.82	-1.0
1,716,576	-		PGA1_c16540	0.84	+0.2
1,716,588	-		PGA1_c16540	0.85	-1.7
1,716,605	-		PGA1_c16540	0.87	-1.1
1,716,728	+				+1.1
1,716,733	+				+0.3
1,716,830	+		PGA1_c16550	0.11	-0.1
1,716,850	-		PGA1_c16550	0.13	+0.7
1,716,860	-		PGA1_c16550	0.14	-1.9
1,716,992	+		PGA1_c16550	0.28	-1.9
1,717,016	+		PGA1_c16550	0.31	+0.7
1,717,016	+		PGA1_c16550	0.31	-0.7
1,717,016	+		PGA1_c16550	0.31	+0.9
1,717,024	-		PGA1_c16550	0.32	-0.1
1,717,024	-		PGA1_c16550	0.32	-0.9
1,717,069	-		PGA1_c16550	0.37	+1.1
1,717,081	-		PGA1_c16550	0.38	+0.6
1,717,197	+		PGA1_c16550	0.51	-0.1
1,717,228	+		PGA1_c16550	0.54	-2.4
1,717,241	-		PGA1_c16550	0.55	-0.7
1,717,255	+		PGA1_c16550	0.57	-0.5
1,717,255	+		PGA1_c16550	0.57	-0.7
1,717,309	+		PGA1_c16550	0.63	-1.3
1,717,309	+		PGA1_c16550	0.63	-0.1
1,717,309	-		PGA1_c16550	0.63	-0.4
1,717,317	-		PGA1_c16550	0.64	+0.3
1,717,344	+		PGA1_c16550	0.67	-0.7
1,717,352	-		PGA1_c16550	0.68	-1.4
1,717,352	-		PGA1_c16550	0.68	-1.9
1,717,352	-		PGA1_c16550	0.68	-0.7
1,717,352	-		PGA1_c16550	0.68	+0.5
1,717,381	+		PGA1_c16550	0.71	-0.3
1,717,389	-		PGA1_c16550	0.72	-0.9
1,717,389	-		PGA1_c16550	0.72	-0.3
1,717,530	+		PGA1_c16550	0.87	+0.1
1,717,561	+				+0.6
1,717,561	+				-1.1
1,717,566	+				-1.4
1,717,567	+				+0.1
1,717,567	+				-2.0
1,717,569	-				-0.6
1,717,575	-				-0.3
1,717,658	-				-0.4
1,717,661	+				+0.1
1,717,661	+				+2.0
1,717,661	+				+0.4
1,717,667	+				-0.7
1,717,667	+				+0.9
1,717,669	-				+0.1
1,717,737	+				+1.2
1,717,746	+				+1.0
1,717,754	-				+0.4
1,717,758	+				+1.9
1,717,776	-				+0.3
1,717,823	-				+0.9
1,717,906	+		PGA1_c16560	0.14	+0.0
1,717,914	-		PGA1_c16560	0.15	+0.6
1,717,923	+		PGA1_c16560	0.15	-1.2
1,717,931	-		PGA1_c16560	0.16	-0.6
1,717,931	-		PGA1_c16560	0.16	-0.9
1,717,950	-		PGA1_c16560	0.18	+0.6
1,717,963	+		PGA1_c16560	0.19	+1.9
1,717,965	-		PGA1_c16560	0.19	+0.5
1,717,971	-		PGA1_c16560	0.20	-1.1
1,717,971	-		PGA1_c16560	0.20	+0.3
1,717,998	+		PGA1_c16560	0.22	+0.3
1,717,998	+		PGA1_c16560	0.22	-0.5
1,717,998	+		PGA1_c16560	0.22	-0.5
1,717,998	+		PGA1_c16560	0.22	+1.7
1,718,006	-		PGA1_c16560	0.23	+1.9
1,718,006	-		PGA1_c16560	0.23	-0.1
1,718,006	-		PGA1_c16560	0.23	+0.9
1,718,011	+		PGA1_c16560	0.23	-1.6
1,718,022	-		PGA1_c16560	0.24	+1.1
1,718,073	+		PGA1_c16560	0.28	+0.5
1,718,090	-		PGA1_c16560	0.30	+1.3
1,718,090	-		PGA1_c16560	0.30	-0.7
1,718,118	+		PGA1_c16560	0.32	-1.1
1,718,126	-		PGA1_c16560	0.33	-1.1
1,718,126	-		PGA1_c16560	0.33	-0.4
1,718,126	-		PGA1_c16560	0.33	+0.9
1,718,126	-		PGA1_c16560	0.33	-0.1
1,718,156	+		PGA1_c16560	0.36	-0.9
1,718,164	-		PGA1_c16560	0.36	-0.9
1,718,189	+		PGA1_c16560	0.39	+1.2
1,718,189	+		PGA1_c16560	0.39	-0.9
1,718,189	+		PGA1_c16560	0.39	-1.0
1,718,189	+		PGA1_c16560	0.39	+0.9
1,718,260	-		PGA1_c16560	0.45	+0.9
1,718,288	-		PGA1_c16560	0.47	+0.4
1,718,312	+		PGA1_c16560	0.50	+2.1
1,718,328	+		PGA1_c16560	0.51	-0.7
1,718,375	+		PGA1_c16560	0.55	+1.6
1,718,388	-		PGA1_c16560	0.56	-2.1
1,718,400	-		PGA1_c16560	0.57	+1.2
1,718,400	-		PGA1_c16560	0.57	+2.7
1,718,442	-		PGA1_c16560	0.61	+2.1
1,718,442	-		PGA1_c16560	0.61	-0.2
1,718,561	-		PGA1_c16560	0.71	+1.1
1,718,616	+		PGA1_c16560	0.76	-1.1
1,718,623	+		PGA1_c16560	0.77	+0.9