Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1542 and HP15_1543 overlap by 4 nucleotides HP15_1543 and HP15_1544 are separated by 38 nucleotides HP15_1544 and HP15_1545 are separated by 7 nucleotides HP15_1545 and HP15_1546 are separated by 173 nucleotides
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843
_1544
HP15_1545: HP15_1545 - anti-sigma-28 factor, FlgM, at 1,628,851 to 1,629,177
_1545
HP15_1546: HP15_1546 - flagella basal body P-ring formation protein FlgA, at 1,629,351 to 1,630,019
_1546
Position (kb)
1628
1629 Strain fitness (log2 ratio)
-1
0
1 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543 at 1627.779 kb on - strand, within HP15_1543 at 1627.808 kb on - strand, within HP15_1543 at 1628.139 kb on + strand, within HP15_1543 at 1628.242 kb on - strand, within HP15_1543 at 1628.328 kb on - strand at 1628.395 kb on - strand at 1628.428 kb on - strand, within HP15_1544 at 1628.562 kb on + strand, within HP15_1544 at 1628.686 kb on + strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.727 kb on - strand, within HP15_1544 at 1628.752 kb on - strand, within HP15_1544 at 1628.785 kb on + strand, within HP15_1544 at 1629.050 kb on + strand, within HP15_1545 at 1629.134 kb on + strand, within HP15_1545 at 1629.186 kb on - strand at 1629.692 kb on + strand, within HP15_1546 at 1629.735 kb on + strand, within HP15_1546 at 1629.841 kb on + strand, within HP15_1546
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 1,627,483 - HP15_1542 0.49 -0.6 1,627,499 + HP15_1542 0.57 +0.2 1,627,665 + HP15_1543 0.11 +0.7 1,627,684 - HP15_1543 0.13 -1.0 1,627,685 - HP15_1543 0.13 -0.4 1,627,740 - HP15_1543 0.21 -0.1 1,627,779 - HP15_1543 0.26 -0.6 1,627,808 - HP15_1543 0.30 -0.3 1,628,139 + HP15_1543 0.74 -0.1 1,628,242 - HP15_1543 0.88 -0.4 1,628,328 - -0.6 1,628,395 - -0.0 1,628,428 - HP15_1544 0.12 +0.8 1,628,562 + HP15_1544 0.40 +0.0 1,628,686 + HP15_1544 0.66 -0.0 1,628,694 - HP15_1544 0.68 -0.6 1,628,694 - HP15_1544 0.68 +0.0 1,628,727 - HP15_1544 0.75 -0.5 1,628,752 - HP15_1544 0.80 +0.0 1,628,785 + HP15_1544 0.87 +0.5 1,629,050 + HP15_1545 0.61 +1.4 1,629,134 + HP15_1545 0.87 -0.3 1,629,186 - -1.1 1,629,692 + HP15_1546 0.51 -0.2 1,629,735 + HP15_1546 0.57 -0.1 1,629,841 + HP15_1546 0.73 +0.6
Or see this region's nucleotide sequence