Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00010

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00010 and PGA1_c00020 are separated by 309 nucleotides PGA1_c00010: PGA1_c00010 - chromosomal replication initiator protein DnaA, at 101 to 1,528 _c00010 PGA1_c00020: PGA1_c00020 - DNA polymerase III subunit beta, at 1,838 to 2,959 _c00020 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 1.512 kb on + strandat 1.515 kb on + strandat 1.626 kb on - strandat 1.679 kb on - strandat 1.744 kb on + strandat 1.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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1,512 + +0.9
1,515 + -0.6
1,626 - -1.0
1,679 - -0.2
1,744 + -1.6
1,750 + -2.1

Or see this region's nucleotide sequence