Strain Fitness in Dechlorosoma suillum PS around Dsui_3342

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3341 and Dsui_3342 are separated by 15 nucleotidesDsui_3342 and Dsui_3343 overlap by 1 nucleotides Dsui_3341: Dsui_3341 - lipopolysaccharide heptosyltransferase II, at 3,580,266 to 3,581,273 _3341 Dsui_3342: Dsui_3342 - ketosteroid isomerase-like enzyme, at 3,581,289 to 3,581,726 _3342 Dsui_3343: Dsui_3343 - putative hydrolase of the alpha/beta-hydrolase fold protein, at 3,581,726 to 3,582,718 _3343 Position (kb) 3581 3582Strain fitness (log2 ratio) -1 0 1 2at 3581.282 kb on - strandat 3581.295 kb on + strandat 3581.343 kb on + strand, within Dsui_3342at 3581.343 kb on + strand, within Dsui_3342at 3581.343 kb on + strand, within Dsui_3342at 3581.457 kb on + strand, within Dsui_3342at 3581.541 kb on + strand, within Dsui_3342at 3581.579 kb on - strand, within Dsui_3342at 3581.776 kb on + strandat 3581.813 kb on + strandat 3581.864 kb on + strand, within Dsui_3343at 3581.894 kb on + strandat 3581.900 kb on + strand, within Dsui_3343at 3581.902 kb on - strandat 3582.315 kb on - strandat 3582.315 kb on - strandat 3582.333 kb on + strand, within Dsui_3343at 3582.475 kb on - strand, within Dsui_3343at 3582.540 kb on - strandat 3582.571 kb on - strandat 3582.587 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
3,581,282 - +0.2
3,581,295 + -0.6
3,581,343 + Dsui_3342 0.12 -0.8
3,581,343 + Dsui_3342 0.12 +0.1
3,581,343 + Dsui_3342 0.12 -0.0
3,581,457 + Dsui_3342 0.38 -1.2
3,581,541 + Dsui_3342 0.58 -1.3
3,581,579 - Dsui_3342 0.66 -0.1
3,581,776 + -0.3
3,581,813 + -1.7
3,581,864 + Dsui_3343 0.14 -0.1
3,581,894 + +0.7
3,581,900 + Dsui_3343 0.18 +0.4
3,581,902 - +0.9
3,582,315 - +2.2
3,582,315 - +0.7
3,582,333 + Dsui_3343 0.61 -0.6
3,582,475 - Dsui_3343 0.75 -0.9
3,582,540 - -0.8
3,582,571 - +1.2
3,582,587 - +0.7

Or see this region's nucleotide sequence