Strain Fitness in Dechlorosoma suillum PS around Dsui_3315

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3312 and Dsui_3313 are separated by 63 nucleotidesDsui_3313 and Dsui_3314 are separated by 108 nucleotidesDsui_3314 and Dsui_3315 are separated by 10 nucleotidesDsui_3315 and Dsui_3316 are separated by 18 nucleotidesDsui_3316 and Dsui_3317 are separated by 105 nucleotides Dsui_3312: Dsui_3312 - hypothetical protein, at 3,554,286 to 3,554,783 _3312 Dsui_3313: Dsui_3313 - hypothetical protein, at 3,554,847 to 3,555,242 _3313 Dsui_3314: Dsui_3314 - biopolymer transport protein, at 3,555,351 to 3,555,767 _3314 Dsui_3315: Dsui_3315 - biopolymer transport protein, at 3,555,778 to 3,556,497 _3315 Dsui_3316: Dsui_3316 - Gram-negative bacterial tonB protein, at 3,556,516 to 3,557,289 _3316 Dsui_3317: Dsui_3317 - cytochrome c551/c552, at 3,557,395 to 3,557,733 _3317 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -2 -1 0 1 2at 3554.845 kb on + strandat 3554.853 kb on - strandat 3554.855 kb on + strandat 3554.855 kb on + strandat 3554.863 kb on - strandat 3554.869 kb on + strandat 3554.911 kb on - strand, within Dsui_3313at 3555.015 kb on - strand, within Dsui_3313at 3555.080 kb on + strandat 3555.105 kb on + strand, within Dsui_3313at 3555.113 kb on - strand, within Dsui_3313at 3555.225 kb on - strandat 3555.251 kb on + strandat 3555.260 kb on - strandat 3555.277 kb on + strandat 3555.337 kb on + strandat 3555.342 kb on + strandat 3555.561 kb on + strand, within Dsui_3314at 3555.589 kb on - strand, within Dsui_3314at 3555.696 kb on + strand, within Dsui_3314at 3555.808 kb on - strandat 3555.820 kb on - strandat 3555.830 kb on + strandat 3555.908 kb on - strand, within Dsui_3315at 3555.961 kb on + strandat 3556.002 kb on - strand, within Dsui_3315at 3556.111 kb on + strandat 3556.119 kb on - strand, within Dsui_3315at 3556.124 kb on - strand, within Dsui_3315at 3556.223 kb on - strand, within Dsui_3315at 3556.230 kb on - strand, within Dsui_3315at 3556.323 kb on + strand, within Dsui_3315at 3556.381 kb on - strand, within Dsui_3315at 3556.449 kb on + strandat 3556.511 kb on - strandat 3556.513 kb on + strandat 3556.587 kb on - strandat 3556.632 kb on + strandat 3556.673 kb on + strandat 3556.762 kb on - strand, within Dsui_3316at 3556.798 kb on - strand, within Dsui_3316at 3556.802 kb on - strand, within Dsui_3316at 3556.845 kb on - strand, within Dsui_3316at 3556.964 kb on + strand, within Dsui_3316at 3556.972 kb on - strand, within Dsui_3316at 3557.093 kb on + strandat 3557.116 kb on - strand, within Dsui_3316at 3557.177 kb on - strand, within Dsui_3316at 3557.187 kb on - strand, within Dsui_3316at 3557.239 kb on + strandat 3557.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,554,845 + -0.3
3,554,853 - +0.0
3,554,855 + +0.4
3,554,855 + -0.3
3,554,863 - -0.7
3,554,869 + +1.2
3,554,911 - Dsui_3313 0.16 -0.1
3,555,015 - Dsui_3313 0.42 +0.1
3,555,080 + +2.2
3,555,105 + Dsui_3313 0.65 +0.8
3,555,113 - Dsui_3313 0.67 -0.4
3,555,225 - -0.1
3,555,251 + -1.7
3,555,260 - +0.6
3,555,277 + -0.1
3,555,337 + -0.5
3,555,342 + +2.2
3,555,561 + Dsui_3314 0.50 -0.2
3,555,589 - Dsui_3314 0.57 -0.5
3,555,696 + Dsui_3314 0.83 +0.2
3,555,808 - -0.3
3,555,820 - -0.2
3,555,830 + +0.2
3,555,908 - Dsui_3315 0.18 -0.6
3,555,961 + +0.7
3,556,002 - Dsui_3315 0.31 +0.0
3,556,111 + +0.9
3,556,119 - Dsui_3315 0.47 +0.2
3,556,124 - Dsui_3315 0.48 +0.1
3,556,223 - Dsui_3315 0.62 -0.8
3,556,230 - Dsui_3315 0.63 +0.8
3,556,323 + Dsui_3315 0.76 -1.3
3,556,381 - Dsui_3315 0.84 +1.0
3,556,449 + +0.2
3,556,511 - -1.2
3,556,513 + -0.1
3,556,587 - -2.0
3,556,632 + +0.7
3,556,673 + +0.7
3,556,762 - Dsui_3316 0.32 -0.5
3,556,798 - Dsui_3316 0.36 +0.4
3,556,802 - Dsui_3316 0.37 +0.1
3,556,845 - Dsui_3316 0.43 -0.3
3,556,964 + Dsui_3316 0.58 +0.2
3,556,972 - Dsui_3316 0.59 +0.0
3,557,093 + +0.2
3,557,116 - Dsui_3316 0.78 +0.5
3,557,177 - Dsui_3316 0.85 -0.5
3,557,187 - Dsui_3316 0.87 +0.3
3,557,239 + -1.1
3,557,294 + -1.1

Or see this region's nucleotide sequence