Strain Fitness in Dechlorosoma suillum PS around Dsui_3031

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3030 and Dsui_3031 are separated by 289 nucleotidesDsui_3031 and Dsui_3032 are separated by 33 nucleotides Dsui_3030: Dsui_3030 - NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit, at 3,240,952 to 3,242,760 _3030 Dsui_3031: Dsui_3031 - enoyl-(acyl-carrier-protein) reductase (NADH), at 3,243,050 to 3,243,814 _3031 Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260 _3032 Position (kb) 3243 3244Strain fitness (log2 ratio) -2 -1 0 1at 3242.079 kb on + strand, within Dsui_3030at 3242.087 kb on - strand, within Dsui_3030at 3242.127 kb on + strand, within Dsui_3030at 3242.159 kb on - strand, within Dsui_3030at 3242.218 kb on - strand, within Dsui_3030at 3242.250 kb on + strand, within Dsui_3030at 3242.282 kb on - strand, within Dsui_3030at 3242.468 kb on + strandat 3242.486 kb on - strand, within Dsui_3030at 3242.609 kb on - strandat 3242.609 kb on - strandat 3242.609 kb on - strandat 3242.609 kb on - strandat 3242.728 kb on - strandat 3242.800 kb on - strandat 3242.800 kb on - strandat 3242.826 kb on - strandat 3242.836 kb on - strandat 3242.993 kb on + strandat 3242.994 kb on + strandat 3243.001 kb on - strandat 3243.009 kb on - strandat 3243.042 kb on - strandat 3243.097 kb on + strandat 3243.103 kb on + strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.284 kb on + strand, within Dsui_3031at 3243.321 kb on + strand, within Dsui_3031at 3243.359 kb on + strand, within Dsui_3031at 3243.367 kb on - strand, within Dsui_3031at 3243.380 kb on + strand, within Dsui_3031at 3243.441 kb on + strand, within Dsui_3031at 3243.495 kb on + strand, within Dsui_3031at 3243.508 kb on - strandat 3243.684 kb on + strand, within Dsui_3031at 3243.825 kb on - strandat 3243.851 kb on - strandat 3243.857 kb on + strandat 3243.915 kb on + strandat 3244.034 kb on + strand, within Dsui_3032at 3244.042 kb on - strand, within Dsui_3032at 3244.498 kb on + strand, within Dsui_3032at 3244.524 kb on + strand, within Dsui_3032at 3244.532 kb on - strand, within Dsui_3032at 3244.737 kb on + strand, within Dsui_3032at 3244.798 kb on + strand, within Dsui_3032

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,242,079 + Dsui_3030 0.62 -0.9
3,242,087 - Dsui_3030 0.63 -2.0
3,242,127 + Dsui_3030 0.65 -0.9
3,242,159 - Dsui_3030 0.67 -0.1
3,242,218 - Dsui_3030 0.70 -1.8
3,242,250 + Dsui_3030 0.72 -0.1
3,242,282 - Dsui_3030 0.74 -1.7
3,242,468 + +0.6
3,242,486 - Dsui_3030 0.85 -1.9
3,242,609 - -1.6
3,242,609 - -0.1
3,242,609 - -0.8
3,242,609 - -1.2
3,242,728 - -1.5
3,242,800 - -1.1
3,242,800 - -1.2
3,242,826 - +0.6
3,242,836 - +0.2
3,242,993 + -0.3
3,242,994 + -1.3
3,243,001 - +1.2
3,243,009 - +0.5
3,243,042 - +0.2
3,243,097 + -0.6
3,243,103 + -0.8
3,243,118 - -0.1
3,243,118 - -1.1
3,243,118 - +0.6
3,243,118 - -1.1
3,243,284 + Dsui_3031 0.31 -0.3
3,243,321 + Dsui_3031 0.35 -0.2
3,243,359 + Dsui_3031 0.40 -1.0
3,243,367 - Dsui_3031 0.41 -0.5
3,243,380 + Dsui_3031 0.43 -0.2
3,243,441 + Dsui_3031 0.51 -1.1
3,243,495 + Dsui_3031 0.58 -0.3
3,243,508 - +1.6
3,243,684 + Dsui_3031 0.83 -0.6
3,243,825 - -0.8
3,243,851 - -0.9
3,243,857 + -0.7
3,243,915 + -0.8
3,244,034 + Dsui_3032 0.13 -0.6
3,244,042 - Dsui_3032 0.14 -2.5
3,244,498 + Dsui_3032 0.46 -1.0
3,244,524 + Dsui_3032 0.48 -0.5
3,244,532 - Dsui_3032 0.48 +0.1
3,244,737 + Dsui_3032 0.63 -0.6
3,244,798 + Dsui_3032 0.67 -0.6

Or see this region's nucleotide sequence