Strain Fitness in Dechlorosoma suillum PS around Dsui_2901

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2900 and Dsui_2901 are separated by 62 nucleotidesDsui_2901 and Dsui_2902 are separated by 224 nucleotidesDsui_2902 and Dsui_2903 are separated by 31 nucleotides Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515 _2900 Dsui_2901: Dsui_2901 - nicotinate-nucleotide pyrophosphorylase, at 3,104,578 to 3,105,462 _2901 Dsui_2902: Dsui_2902 - hypothetical protein, at 3,105,687 to 3,105,824 _2902 Dsui_2903: Dsui_2903 - methyltransferase family protein, at 3,105,856 to 3,106,476 _2903 Position (kb) 3104 3105 3106Strain fitness (log2 ratio) -2 -1 0 1 2at 3103.961 kb on - strand, within Dsui_2900at 3103.992 kb on - strand, within Dsui_2900at 3104.030 kb on + strandat 3104.032 kb on - strand, within Dsui_2900at 3104.104 kb on - strand, within Dsui_2900at 3104.105 kb on - strandat 3104.115 kb on - strand, within Dsui_2900at 3104.116 kb on + strandat 3104.212 kb on + strandat 3104.268 kb on + strand, within Dsui_2900at 3104.302 kb on + strandat 3104.425 kb on + strandat 3104.433 kb on - strandat 3104.440 kb on - strandat 3104.473 kb on + strandat 3104.585 kb on + strandat 3105.511 kb on - strandat 3105.556 kb on + strandat 3105.598 kb on + strandat 3105.678 kb on + strandat 3105.772 kb on + strand, within Dsui_2902at 3105.812 kb on + strandat 3105.817 kb on + strandat 3105.887 kb on - strandat 3105.914 kb on + strandat 3105.992 kb on - strand, within Dsui_2903at 3106.055 kb on - strand, within Dsui_2903at 3106.163 kb on - strand, within Dsui_2903at 3106.178 kb on + strand, within Dsui_2903at 3106.345 kb on + strand, within Dsui_2903at 3106.345 kb on + strandat 3106.348 kb on - strand, within Dsui_2903at 3106.407 kb on - strand, within Dsui_2903at 3106.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,103,961 - Dsui_2900 0.63 +0.6
3,103,992 - Dsui_2900 0.65 -1.6
3,104,030 + +0.9
3,104,032 - Dsui_2900 0.67 -0.2
3,104,104 - Dsui_2900 0.72 +0.6
3,104,105 - -0.1
3,104,115 - Dsui_2900 0.73 -1.1
3,104,116 + +0.2
3,104,212 + +2.2
3,104,268 + Dsui_2900 0.83 +1.2
3,104,302 + -0.1
3,104,425 + +1.2
3,104,433 - -0.0
3,104,440 - -0.2
3,104,473 + +0.2
3,104,585 + +0.9
3,105,511 - +0.2
3,105,556 + -0.4
3,105,598 + -1.1
3,105,678 + -1.0
3,105,772 + Dsui_2902 0.62 -1.7
3,105,812 + -0.8
3,105,817 + -1.1
3,105,887 - -1.0
3,105,914 + +0.5
3,105,992 - Dsui_2903 0.22 -0.5
3,106,055 - Dsui_2903 0.32 -0.9
3,106,163 - Dsui_2903 0.49 -1.8
3,106,178 + Dsui_2903 0.52 -0.8
3,106,345 + Dsui_2903 0.79 +0.1
3,106,345 + +0.6
3,106,348 - Dsui_2903 0.79 -0.6
3,106,407 - Dsui_2903 0.89 -0.4
3,106,444 - -0.2

Or see this region's nucleotide sequence