Strain Fitness in Dechlorosoma suillum PS around Dsui_2899

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2898 and Dsui_2899 are separated by 42 nucleotidesDsui_2899 and Dsui_2900 overlap by 4 nucleotides Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113 _2898 Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034 _2899 Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515 _2900 Position (kb) 3102 3103 3104Strain fitness (log2 ratio) -2 -1 0 1 2at 3101.181 kb on - strandat 3101.506 kb on - strandat 3101.702 kb on + strandat 3101.825 kb on - strandat 3101.970 kb on + strandat 3102.045 kb on - strandat 3102.224 kb on + strandat 3102.236 kb on + strandat 3102.270 kb on + strand, within Dsui_2899at 3102.333 kb on - strandat 3102.344 kb on - strandat 3102.433 kb on + strand, within Dsui_2899at 3102.479 kb on + strand, within Dsui_2899at 3102.581 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.620 kb on - strandat 3102.623 kb on + strand, within Dsui_2899at 3102.643 kb on + strand, within Dsui_2899at 3102.724 kb on - strandat 3102.787 kb on + strand, within Dsui_2899at 3102.795 kb on - strandat 3102.797 kb on - strand, within Dsui_2899at 3102.800 kb on - strandat 3103.050 kb on + strandat 3103.203 kb on + strand, within Dsui_2900at 3103.211 kb on - strand, within Dsui_2900at 3103.312 kb on + strand, within Dsui_2900at 3103.320 kb on - strand, within Dsui_2900at 3103.520 kb on + strand, within Dsui_2900at 3103.961 kb on - strand, within Dsui_2900at 3103.992 kb on - strand, within Dsui_2900at 3104.030 kb on + strandat 3104.032 kb on - strand, within Dsui_2900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
3,101,181 - +0.6
3,101,506 - +1.2
3,101,702 + +2.2
3,101,825 - +2.2
3,101,970 + -0.4
3,102,045 - -0.1
3,102,224 + -0.0
3,102,236 + -0.3
3,102,270 + Dsui_2899 0.13 -0.3
3,102,333 - -0.1
3,102,344 - +1.2
3,102,433 + Dsui_2899 0.32 -1.0
3,102,479 + Dsui_2899 0.37 -2.4
3,102,581 + Dsui_2899 0.48 -2.0
3,102,618 + Dsui_2899 0.53 +0.2
3,102,618 + Dsui_2899 0.53 -1.8
3,102,620 - +0.6
3,102,623 + Dsui_2899 0.53 -0.3
3,102,643 + Dsui_2899 0.55 -0.1
3,102,724 - -0.1
3,102,787 + Dsui_2899 0.72 +0.0
3,102,795 - +0.9
3,102,797 - Dsui_2899 0.73 +0.8
3,102,800 - +2.2
3,103,050 + -0.5
3,103,203 + Dsui_2900 0.12 -1.8
3,103,211 - Dsui_2900 0.12 -1.1
3,103,312 + Dsui_2900 0.19 -0.6
3,103,320 - Dsui_2900 0.19 -1.0
3,103,520 + Dsui_2900 0.33 +0.4
3,103,961 - Dsui_2900 0.63 +0.6
3,103,992 - Dsui_2900 0.65 -1.6
3,104,030 + +0.9
3,104,032 - Dsui_2900 0.67 -0.2

Or see this region's nucleotide sequence