Strain Fitness in Dechlorosoma suillum PS around Dsui_2867

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2866 and Dsui_2867 are separated by 271 nucleotidesDsui_2867 and Dsui_2868 are separated by 46 nucleotides Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874 _2866 Dsui_2867: Dsui_2867 - surface antigen family protein, at 3,061,146 to 3,061,844 _2867 Dsui_2868: Dsui_2868 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein, at 3,061,891 to 3,063,858 _2868 Position (kb) 3061 3062Strain fitness (log2 ratio) -2 -1 0 1 2at 3060.302 kb on - strand, within Dsui_2866at 3060.468 kb on - strandat 3060.482 kb on - strand, within Dsui_2866at 3060.544 kb on - strand, within Dsui_2866at 3060.605 kb on - strand, within Dsui_2866at 3060.605 kb on - strand, within Dsui_2866at 3060.716 kb on - strandat 3060.797 kb on + strandat 3060.891 kb on - strandat 3061.082 kb on + strandat 3061.136 kb on + strandat 3061.424 kb on + strand, within Dsui_2867at 3061.424 kb on + strand, within Dsui_2867at 3061.472 kb on + strand, within Dsui_2867at 3061.555 kb on - strandat 3061.750 kb on + strand, within Dsui_2867at 3061.755 kb on + strandat 3061.805 kb on + strandat 3061.888 kb on + strandat 3061.938 kb on + strandat 3062.018 kb on + strandat 3062.256 kb on + strand, within Dsui_2868at 3062.366 kb on + strand, within Dsui_2868at 3062.389 kb on + strand, within Dsui_2868at 3062.730 kb on - strand, within Dsui_2868at 3062.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,060,302 - Dsui_2866 0.71 +0.9
3,060,468 - +2.2
3,060,482 - Dsui_2866 0.80 -1.0
3,060,544 - Dsui_2866 0.83 +0.9
3,060,605 - Dsui_2866 0.86 +0.2
3,060,605 - Dsui_2866 0.86 +1.4
3,060,716 - -0.6
3,060,797 + +2.2
3,060,891 - -0.4
3,061,082 + -1.4
3,061,136 + -0.4
3,061,424 + Dsui_2867 0.40 +0.2
3,061,424 + Dsui_2867 0.40 +0.0
3,061,472 + Dsui_2867 0.47 +1.2
3,061,555 - +1.2
3,061,750 + Dsui_2867 0.86 -0.9
3,061,755 + +0.6
3,061,805 + -1.1
3,061,888 + +0.6
3,061,938 + -0.6
3,062,018 + -1.7
3,062,256 + Dsui_2868 0.19 -0.8
3,062,366 + Dsui_2868 0.24 +0.2
3,062,389 + Dsui_2868 0.25 -1.9
3,062,730 - Dsui_2868 0.43 -0.6
3,062,839 - +1.2

Or see this region's nucleotide sequence