Strain Fitness in Dechlorosoma suillum PS around Dsui_2748

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2747 and Dsui_2748 are separated by 92 nucleotidesDsui_2748 and Dsui_2749 are separated by 122 nucleotides Dsui_2747: Dsui_2747 - uncharacterized integral membrane protein, at 2,903,003 to 2,903,860 _2747 Dsui_2748: Dsui_2748 - hypothetical protein, at 2,903,953 to 2,904,237 _2748 Dsui_2749: Dsui_2749 - putative acyltransferase, at 2,904,360 to 2,905,478 _2749 Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -2 -1 0 1 2at 2902.958 kb on + strandat 2903.016 kb on - strandat 2903.018 kb on + strandat 2903.174 kb on - strand, within Dsui_2747at 2903.189 kb on - strand, within Dsui_2747at 2903.313 kb on - strand, within Dsui_2747at 2903.316 kb on + strand, within Dsui_2747at 2903.348 kb on + strand, within Dsui_2747at 2903.361 kb on + strand, within Dsui_2747at 2903.369 kb on - strand, within Dsui_2747at 2903.374 kb on - strand, within Dsui_2747at 2903.460 kb on - strandat 2903.531 kb on - strand, within Dsui_2747at 2903.615 kb on - strand, within Dsui_2747at 2903.658 kb on + strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.714 kb on - strand, within Dsui_2747at 2903.754 kb on + strand, within Dsui_2747at 2903.784 kb on - strandat 2903.792 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.831 kb on + strandat 2903.846 kb on - strandat 2903.854 kb on + strandat 2903.867 kb on - strandat 2903.874 kb on - strandat 2903.932 kb on + strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.959 kb on - strandat 2903.987 kb on + strand, within Dsui_2748at 2903.987 kb on + strandat 2903.987 kb on + strand, within Dsui_2748at 2904.014 kb on + strand, within Dsui_2748at 2904.124 kb on + strand, within Dsui_2748at 2904.124 kb on + strandat 2904.151 kb on + strand, within Dsui_2748at 2904.286 kb on + strandat 2904.291 kb on - strandat 2904.341 kb on + strandat 2904.380 kb on + strandat 2904.388 kb on + strandat 2904.471 kb on + strandat 2904.471 kb on + strandat 2904.479 kb on - strand, within Dsui_2749at 2904.532 kb on + strand, within Dsui_2749at 2904.636 kb on - strand, within Dsui_2749at 2904.669 kb on + strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.810 kb on - strand, within Dsui_2749at 2904.884 kb on - strand, within Dsui_2749at 2904.905 kb on + strand, within Dsui_2749at 2904.913 kb on - strand, within Dsui_2749at 2904.984 kb on - strand, within Dsui_2749at 2905.080 kb on + strand, within Dsui_2749at 2905.102 kb on + strand, within Dsui_2749at 2905.143 kb on - strand, within Dsui_2749at 2905.146 kb on + strand, within Dsui_2749at 2905.221 kb on - strand, within Dsui_2749at 2905.221 kb on - strand, within Dsui_2749

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,902,958 + -1.4
2,903,016 - -0.6
2,903,018 + -0.3
2,903,174 - Dsui_2747 0.20 -0.2
2,903,189 - Dsui_2747 0.22 -0.6
2,903,313 - Dsui_2747 0.36 -0.3
2,903,316 + Dsui_2747 0.36 -0.4
2,903,348 + Dsui_2747 0.40 +0.0
2,903,361 + Dsui_2747 0.42 -0.1
2,903,369 - Dsui_2747 0.43 -1.4
2,903,374 - Dsui_2747 0.43 -0.3
2,903,460 - +0.9
2,903,531 - Dsui_2747 0.62 -1.1
2,903,615 - Dsui_2747 0.71 -1.0
2,903,658 + Dsui_2747 0.76 -0.3
2,903,666 - Dsui_2747 0.77 +0.2
2,903,666 - Dsui_2747 0.77 +0.3
2,903,666 - Dsui_2747 0.77 -0.3
2,903,666 - Dsui_2747 0.77 +0.6
2,903,714 - Dsui_2747 0.83 -0.1
2,903,754 + Dsui_2747 0.88 -0.6
2,903,784 - -0.8
2,903,792 + +0.1
2,903,820 + -0.1
2,903,820 + -0.6
2,903,820 + +0.6
2,903,831 + -1.1
2,903,846 - -1.6
2,903,854 + -0.2
2,903,867 - -0.1
2,903,874 - -0.5
2,903,932 + +0.4
2,903,940 - -0.1
2,903,940 - +0.0
2,903,940 - -0.7
2,903,940 - +0.0
2,903,959 - -0.3
2,903,987 + Dsui_2748 0.12 -0.6
2,903,987 + +2.2
2,903,987 + Dsui_2748 0.12 +0.2
2,904,014 + Dsui_2748 0.21 +0.1
2,904,124 + Dsui_2748 0.60 -1.7
2,904,124 + +0.9
2,904,151 + Dsui_2748 0.69 -1.9
2,904,286 + -0.1
2,904,291 - -0.4
2,904,341 + -0.1
2,904,380 + -0.8
2,904,388 + -1.2
2,904,471 + -0.8
2,904,471 + +0.6
2,904,479 - Dsui_2749 0.11 +0.1
2,904,532 + Dsui_2749 0.15 -2.3
2,904,636 - Dsui_2749 0.25 -0.1
2,904,669 + Dsui_2749 0.28 -1.2
2,904,677 - Dsui_2749 0.28 -0.1
2,904,677 - Dsui_2749 0.28 -1.0
2,904,677 - Dsui_2749 0.28 -0.2
2,904,677 - Dsui_2749 0.28 -0.2
2,904,810 - Dsui_2749 0.40 -0.6
2,904,884 - Dsui_2749 0.47 -0.1
2,904,905 + Dsui_2749 0.49 +0.0
2,904,913 - Dsui_2749 0.49 -1.0
2,904,984 - Dsui_2749 0.56 +0.2
2,905,080 + Dsui_2749 0.64 +0.0
2,905,102 + Dsui_2749 0.66 -1.0
2,905,143 - Dsui_2749 0.70 -0.6
2,905,146 + Dsui_2749 0.70 +0.4
2,905,221 - Dsui_2749 0.77 +0.1
2,905,221 - Dsui_2749 0.77 -0.1

Or see this region's nucleotide sequence