Strain Fitness in Dechlorosoma suillum PS around Dsui_2734

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2732 and Dsui_2733 are separated by 56 nucleotidesDsui_2733 and Dsui_2734 are separated by 137 nucleotidesDsui_2734 and Dsui_2735 are separated by 576 nucleotides Dsui_2732: Dsui_2732 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,887,207 to 2,888,073 _2732 Dsui_2733: Dsui_2733 - bacterioferritin, at 2,888,130 to 2,888,603 _2733 Dsui_2734: Dsui_2734 - bacterioferritin-associated ferredoxin, at 2,888,741 to 2,888,947 _2734 Dsui_2735: Dsui_2735 - glycine cleavage system T protein, at 2,889,524 to 2,890,615 _2735 Position (kb) 2888 2889Strain fitness (log2 ratio) -1 0 1at 2887.926 kb on - strand, within Dsui_2732at 2888.030 kb on - strandat 2888.101 kb on + strandat 2888.314 kb on - strand, within Dsui_2733at 2888.405 kb on - strand, within Dsui_2733at 2888.444 kb on + strand, within Dsui_2733at 2888.698 kb on - strandat 2888.815 kb on + strand, within Dsui_2734at 2888.856 kb on - strand, within Dsui_2734at 2888.856 kb on - strand, within Dsui_2734at 2888.947 kb on - strandat 2888.964 kb on - strandat 2888.964 kb on - strandat 2889.161 kb on + strandat 2889.228 kb on + strandat 2889.310 kb on + strandat 2889.312 kb on + strandat 2889.377 kb on + strandat 2889.377 kb on + strandat 2889.408 kb on + strandat 2889.421 kb on + strandat 2889.422 kb on - strandat 2889.563 kb on + strandat 2889.702 kb on - strandat 2889.775 kb on + strand, within Dsui_2735at 2889.788 kb on - strandat 2889.849 kb on + strand, within Dsui_2735at 2889.889 kb on + strand, within Dsui_2735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
2,887,926 - Dsui_2732 0.83 -1.1
2,888,030 - -0.5
2,888,101 + +0.4
2,888,314 - Dsui_2733 0.39 -0.6
2,888,405 - Dsui_2733 0.58 +0.4
2,888,444 + Dsui_2733 0.66 +0.2
2,888,698 - -1.0
2,888,815 + Dsui_2734 0.36 -1.1
2,888,856 - Dsui_2734 0.56 -0.7
2,888,856 - Dsui_2734 0.56 -1.2
2,888,947 - +0.2
2,888,964 - -0.6
2,888,964 - -0.5
2,889,161 + -0.8
2,889,228 + -0.1
2,889,310 + +0.0
2,889,312 + -0.3
2,889,377 + -0.1
2,889,377 + -0.3
2,889,408 + -0.7
2,889,421 + +0.1
2,889,422 - +1.2
2,889,563 + -0.8
2,889,702 - +0.2
2,889,775 + Dsui_2735 0.23 -0.6
2,889,788 - +1.2
2,889,849 + Dsui_2735 0.30 +0.3
2,889,889 + Dsui_2735 0.33 +0.1

Or see this region's nucleotide sequence