Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2694 and Dsui_2695 are separated by 326 nucleotides Dsui_2695 and Dsui_2696 are separated by 5 nucleotides
Dsui_2694: Dsui_2694 - ribosomal protein S2, at 2,845,815 to 2,846,564
_2694
Dsui_2695: Dsui_2695 - methionine aminopeptidase, type I, at 2,846,891 to 2,847,688
_2695
Dsui_2696: Dsui_2696 - (protein-PII) uridylyltransferase, at 2,847,694 to 2,850,285
_2696
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2845.898 kb on - strand, within Dsui_2694 at 2846.830 kb on + strand at 2846.830 kb on + strand at 2846.830 kb on + strand at 2846.844 kb on - strand at 2846.847 kb on + strand at 2846.847 kb on + strand at 2846.860 kb on + strand at 2846.871 kb on + strand at 2846.982 kb on + strand, within Dsui_2695 at 2846.984 kb on - strand, within Dsui_2695 at 2847.065 kb on + strand, within Dsui_2695 at 2847.126 kb on + strand, within Dsui_2695 at 2847.134 kb on - strand, within Dsui_2695 at 2847.210 kb on - strand at 2847.229 kb on - strand, within Dsui_2695 at 2847.254 kb on + strand, within Dsui_2695 at 2847.317 kb on - strand, within Dsui_2695 at 2847.319 kb on + strand, within Dsui_2695 at 2847.337 kb on + strand, within Dsui_2695 at 2847.449 kb on + strand, within Dsui_2695 at 2847.450 kb on - strand, within Dsui_2695 at 2847.466 kb on + strand, within Dsui_2695 at 2847.494 kb on + strand, within Dsui_2695 at 2847.515 kb on - strand, within Dsui_2695 at 2847.644 kb on - strand at 2847.649 kb on - strand at 2847.667 kb on + strand at 2847.696 kb on + strand at 2847.715 kb on + strand at 2847.830 kb on + strand at 2847.838 kb on - strand at 2847.878 kb on + strand at 2847.918 kb on + strand at 2848.053 kb on - strand at 2848.115 kb on - strand, within Dsui_2696 at 2848.175 kb on + strand, within Dsui_2696 at 2848.191 kb on - strand, within Dsui_2696 at 2848.226 kb on - strand, within Dsui_2696 at 2848.299 kb on + strand, within Dsui_2696 at 2848.306 kb on - strand, within Dsui_2696 at 2848.338 kb on + strand at 2848.362 kb on - strand, within Dsui_2696 at 2848.438 kb on + strand, within Dsui_2696 at 2848.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,845,898 - Dsui_2694 0.11 -1.8 2,846,830 + +0.7 2,846,830 + -0.6 2,846,830 + -0.1 2,846,844 - -0.1 2,846,847 + -0.2 2,846,847 + -0.4 2,846,860 + -0.1 2,846,871 + +0.0 2,846,982 + Dsui_2695 0.11 +0.2 2,846,984 - Dsui_2695 0.12 -0.0 2,847,065 + Dsui_2695 0.22 -0.0 2,847,126 + Dsui_2695 0.29 +0.4 2,847,134 - Dsui_2695 0.30 -1.0 2,847,210 - -1.0 2,847,229 - Dsui_2695 0.42 -1.0 2,847,254 + Dsui_2695 0.45 +0.5 2,847,317 - Dsui_2695 0.53 -0.4 2,847,319 + Dsui_2695 0.54 +0.3 2,847,337 + Dsui_2695 0.56 -0.3 2,847,449 + Dsui_2695 0.70 -0.2 2,847,450 - Dsui_2695 0.70 -0.7 2,847,466 + Dsui_2695 0.72 -0.7 2,847,494 + Dsui_2695 0.76 -0.2 2,847,515 - Dsui_2695 0.78 -1.3 2,847,644 - +0.8 2,847,649 - +1.0 2,847,667 + -0.9 2,847,696 + -0.4 2,847,715 + -1.6 2,847,830 + -3.9 2,847,838 - -2.5 2,847,878 + -5.0 2,847,918 + -4.3 2,848,053 - +0.6 2,848,115 - Dsui_2696 0.16 -1.1 2,848,175 + Dsui_2696 0.19 -4.3 2,848,191 - Dsui_2696 0.19 -1.9 2,848,226 - Dsui_2696 0.21 -1.0 2,848,299 + Dsui_2696 0.23 -2.7 2,848,306 - Dsui_2696 0.24 -3.5 2,848,338 + +0.2 2,848,362 - Dsui_2696 0.26 -4.3 2,848,438 + Dsui_2696 0.29 -2.2 2,848,601 - -0.1
Or see this region's nucleotide sequence