Strain Fitness in Dechlorosoma suillum PS around Dsui_2680

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2678 and Dsui_2679 are separated by 117 nucleotidesDsui_2679 and Dsui_2680 are separated by 3 nucleotidesDsui_2680 and Dsui_2681 overlap by 20 nucleotides Dsui_2678: Dsui_2678 - hypothetical protein, at 2,830,682 to 2,831,524 _2678 Dsui_2679: Dsui_2679 - rRNA methylase, at 2,831,642 to 2,832,418 _2679 Dsui_2680: Dsui_2680 - ribonuclease HII, at 2,832,422 to 2,833,018 _2680 Dsui_2681: Dsui_2681 - lipid-A-disaccharide synthase, at 2,832,999 to 2,834,186 _2681 Position (kb) 2832 2833 2834Strain fitness (log2 ratio) -2 -1 0 1at 2831.442 kb on + strandat 2831.442 kb on + strandat 2831.450 kb on - strandat 2831.540 kb on + strandat 2831.628 kb on - strandat 2831.703 kb on - strandat 2831.704 kb on - strandat 2831.732 kb on - strand, within Dsui_2679at 2831.795 kb on - strand, within Dsui_2679at 2831.889 kb on + strandat 2831.961 kb on + strand, within Dsui_2679at 2831.969 kb on - strand, within Dsui_2679at 2831.974 kb on - strand, within Dsui_2679at 2832.060 kb on + strand, within Dsui_2679at 2832.062 kb on + strand, within Dsui_2679at 2832.114 kb on + strand, within Dsui_2679at 2832.179 kb on + strand, within Dsui_2679at 2832.179 kb on + strand, within Dsui_2679at 2832.187 kb on - strand, within Dsui_2679at 2832.201 kb on - strand, within Dsui_2679at 2832.234 kb on + strand, within Dsui_2679at 2832.247 kb on - strand, within Dsui_2679at 2832.347 kb on + strandat 2832.420 kb on + strandat 2832.420 kb on + strandat 2832.428 kb on - strandat 2832.443 kb on - strandat 2832.460 kb on + strandat 2832.492 kb on - strand, within Dsui_2680at 2832.523 kb on + strand, within Dsui_2680at 2832.544 kb on + strand, within Dsui_2680at 2832.585 kb on - strand, within Dsui_2680at 2832.611 kb on - strand, within Dsui_2680at 2832.651 kb on + strand, within Dsui_2680at 2832.659 kb on - strand, within Dsui_2680at 2832.814 kb on - strand, within Dsui_2680at 2832.859 kb on - strand, within Dsui_2680at 2832.911 kb on - strand, within Dsui_2680

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,831,442 + -1.0
2,831,442 + -1.6
2,831,450 - -2.5
2,831,540 + -0.6
2,831,628 - +0.4
2,831,703 - +0.5
2,831,704 - -0.2
2,831,732 - Dsui_2679 0.12 -0.3
2,831,795 - Dsui_2679 0.20 -0.4
2,831,889 + +1.2
2,831,961 + Dsui_2679 0.41 -1.1
2,831,969 - Dsui_2679 0.42 -0.5
2,831,974 - Dsui_2679 0.43 -0.0
2,832,060 + Dsui_2679 0.54 -1.5
2,832,062 + Dsui_2679 0.54 -0.2
2,832,114 + Dsui_2679 0.61 -1.5
2,832,179 + Dsui_2679 0.69 -1.1
2,832,179 + Dsui_2679 0.69 -1.7
2,832,187 - Dsui_2679 0.70 -1.0
2,832,201 - Dsui_2679 0.72 -1.8
2,832,234 + Dsui_2679 0.76 +1.2
2,832,247 - Dsui_2679 0.78 -0.4
2,832,347 + -1.4
2,832,420 + +0.3
2,832,420 + -1.0
2,832,428 - -1.1
2,832,443 - -1.5
2,832,460 + +0.6
2,832,492 - Dsui_2680 0.12 -0.7
2,832,523 + Dsui_2680 0.17 -0.6
2,832,544 + Dsui_2680 0.20 -2.3
2,832,585 - Dsui_2680 0.27 -0.9
2,832,611 - Dsui_2680 0.32 -0.4
2,832,651 + Dsui_2680 0.38 -0.0
2,832,659 - Dsui_2680 0.40 -0.2
2,832,814 - Dsui_2680 0.66 -0.9
2,832,859 - Dsui_2680 0.73 -0.7
2,832,911 - Dsui_2680 0.82 -0.0

Or see this region's nucleotide sequence