Strain Fitness in Dechlorosoma suillum PS around Dsui_2666

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2665 and Dsui_2666 are separated by 144 nucleotidesDsui_2666 and Dsui_2667 are separated by 12 nucleotidesDsui_2667 and Dsui_2668 overlap by 4 nucleotides Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313 _2665 Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901 _2666 Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447 _2667 Dsui_2668: Dsui_2668 - putative phosphatase, at 2,819,444 to 2,821,390 _2668 Position (kb) 2818 2819Strain fitness (log2 ratio) -2 -1 0 1 2at 2817.519 kb on + strandat 2817.655 kb on - strandat 2817.672 kb on - strandat 2817.708 kb on + strandat 2817.716 kb on - strandat 2817.868 kb on + strandat 2817.882 kb on + strandat 2817.922 kb on + strandat 2817.923 kb on + strand, within Dsui_2665at 2818.005 kb on + strandat 2818.013 kb on - strandat 2818.059 kb on - strandat 2818.093 kb on + strandat 2818.357 kb on - strandat 2818.378 kb on + strandat 2818.392 kb on - strandat 2818.447 kb on + strandat 2818.455 kb on + strandat 2818.471 kb on - strandat 2818.569 kb on - strand, within Dsui_2666at 2818.597 kb on - strand, within Dsui_2666at 2818.693 kb on - strand, within Dsui_2666at 2818.754 kb on - strand, within Dsui_2666at 2818.758 kb on + strand, within Dsui_2666at 2819.006 kb on - strandat 2819.118 kb on + strand, within Dsui_2667at 2819.274 kb on + strand, within Dsui_2667at 2819.274 kb on + strand, within Dsui_2667at 2819.389 kb on + strand, within Dsui_2667at 2819.407 kb on + strandat 2819.455 kb on - strandat 2819.617 kb on + strandat 2819.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,817,519 + +2.2
2,817,655 - +1.2
2,817,672 - +2.2
2,817,708 + +0.6
2,817,716 - +1.2
2,817,868 + +0.2
2,817,882 + +0.6
2,817,922 + +1.2
2,817,923 + Dsui_2665 0.54 -0.8
2,818,005 + +1.2
2,818,013 - -0.1
2,818,059 - +1.2
2,818,093 + +0.2
2,818,357 - +2.2
2,818,378 + +1.2
2,818,392 - +2.2
2,818,447 + -0.9
2,818,455 + -1.7
2,818,471 - -0.6
2,818,569 - Dsui_2666 0.25 -0.6
2,818,597 - Dsui_2666 0.31 +0.6
2,818,693 - Dsui_2666 0.53 -1.0
2,818,754 - Dsui_2666 0.67 -1.3
2,818,758 + Dsui_2666 0.68 -1.5
2,819,006 - +0.2
2,819,118 + Dsui_2667 0.38 +0.2
2,819,274 + Dsui_2667 0.67 -0.3
2,819,274 + Dsui_2667 0.67 -0.4
2,819,389 + Dsui_2667 0.89 -1.6
2,819,407 + -0.0
2,819,455 - -0.1
2,819,617 + -2.6
2,819,662 + +1.2

Or see this region's nucleotide sequence