Strain Fitness in Dechlorosoma suillum PS around Dsui_2427

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2425 and Dsui_2426 are separated by 184 nucleotidesDsui_2426 and Dsui_2427 are separated by 15 nucleotidesDsui_2427 and Dsui_2428 are separated by 185 nucleotidesDsui_2428 and Dsui_2429 overlap by 4 nucleotides Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865 _2425 Dsui_2426: Dsui_2426 - hypothetical protein, at 2,586,050 to 2,586,832 _2426 Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921 _2427 Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583 _2428 Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719 _2429 Position (kb) 2586 2587 2588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2585.877 kb on + strandat 2585.877 kb on + strandat 2585.885 kb on - strandat 2585.885 kb on - strandat 2585.897 kb on - strandat 2585.968 kb on - strandat 2585.983 kb on + strandat 2586.032 kb on + strandat 2586.098 kb on - strandat 2586.127 kb on + strandat 2586.231 kb on + strand, within Dsui_2426at 2586.277 kb on + strand, within Dsui_2426at 2586.279 kb on - strand, within Dsui_2426at 2586.280 kb on - strand, within Dsui_2426at 2586.301 kb on - strand, within Dsui_2426at 2586.321 kb on + strand, within Dsui_2426at 2586.329 kb on - strand, within Dsui_2426at 2586.361 kb on + strand, within Dsui_2426at 2586.369 kb on + strandat 2586.369 kb on + strandat 2586.377 kb on - strand, within Dsui_2426at 2586.396 kb on + strand, within Dsui_2426at 2586.510 kb on - strand, within Dsui_2426at 2586.544 kb on - strandat 2586.602 kb on - strand, within Dsui_2426at 2586.629 kb on + strandat 2586.629 kb on + strand, within Dsui_2426at 2586.951 kb on - strandat 2587.016 kb on - strand, within Dsui_2427at 2587.021 kb on - strand, within Dsui_2427at 2587.047 kb on + strand, within Dsui_2427at 2587.068 kb on - strand, within Dsui_2427at 2587.292 kb on + strand, within Dsui_2427at 2587.294 kb on - strand, within Dsui_2427at 2587.317 kb on + strand, within Dsui_2427at 2587.367 kb on - strand, within Dsui_2427at 2587.500 kb on - strand, within Dsui_2427at 2587.511 kb on - strand, within Dsui_2427at 2587.555 kb on + strand, within Dsui_2427at 2587.600 kb on + strandat 2587.608 kb on - strand, within Dsui_2427at 2587.652 kb on + strand, within Dsui_2427at 2587.656 kb on - strand, within Dsui_2427at 2587.696 kb on + strand, within Dsui_2427at 2587.704 kb on - strand, within Dsui_2427at 2587.704 kb on - strand, within Dsui_2427at 2587.704 kb on - strand, within Dsui_2427at 2587.739 kb on - strand, within Dsui_2427at 2587.787 kb on - strand, within Dsui_2427at 2587.857 kb on - strandat 2587.916 kb on - strandat 2588.223 kb on + strand, within Dsui_2428at 2588.287 kb on - strandat 2588.332 kb on + strand, within Dsui_2428at 2588.401 kb on + strand, within Dsui_2428at 2588.540 kb on + strandat 2588.543 kb on - strandat 2588.610 kb on - strandat 2588.662 kb on + strandat 2588.667 kb on + strandat 2588.678 kb on - strandat 2588.695 kb on + strand, within Dsui_2429at 2588.739 kb on + strand, within Dsui_2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,585,877 + +0.7
2,585,877 + +0.7
2,585,885 - -0.7
2,585,885 - -0.6
2,585,897 - +0.0
2,585,968 - -0.2
2,585,983 + +0.7
2,586,032 + -1.4
2,586,098 - -0.5
2,586,127 + +0.1
2,586,231 + Dsui_2426 0.23 +1.0
2,586,277 + Dsui_2426 0.29 +0.0
2,586,279 - Dsui_2426 0.29 -1.7
2,586,280 - Dsui_2426 0.29 -0.7
2,586,301 - Dsui_2426 0.32 -1.1
2,586,321 + Dsui_2426 0.35 -1.5
2,586,329 - Dsui_2426 0.36 -0.9
2,586,361 + Dsui_2426 0.40 +0.6
2,586,369 + +0.3
2,586,369 + +0.3
2,586,377 - Dsui_2426 0.42 -0.3
2,586,396 + Dsui_2426 0.44 -0.9
2,586,510 - Dsui_2426 0.59 -0.4
2,586,544 - +0.7
2,586,602 - Dsui_2426 0.70 +0.1
2,586,629 + +1.3
2,586,629 + Dsui_2426 0.74 -0.3
2,586,951 - -0.9
2,587,016 - Dsui_2427 0.16 -1.2
2,587,021 - Dsui_2427 0.16 -0.3
2,587,047 + Dsui_2427 0.19 -2.5
2,587,068 - Dsui_2427 0.20 -1.9
2,587,292 + Dsui_2427 0.41 -2.2
2,587,294 - Dsui_2427 0.42 -0.6
2,587,317 + Dsui_2427 0.44 -1.0
2,587,367 - Dsui_2427 0.48 -2.8
2,587,500 - Dsui_2427 0.61 -0.3
2,587,511 - Dsui_2427 0.62 -0.5
2,587,555 + Dsui_2427 0.66 -0.3
2,587,600 + +0.7
2,587,608 - Dsui_2427 0.71 -1.0
2,587,652 + Dsui_2427 0.75 -2.0
2,587,656 - Dsui_2427 0.75 -1.3
2,587,696 + Dsui_2427 0.79 +0.4
2,587,704 - Dsui_2427 0.80 -0.8
2,587,704 - Dsui_2427 0.80 -2.2
2,587,704 - Dsui_2427 0.80 -2.1
2,587,739 - Dsui_2427 0.83 -2.5
2,587,787 - Dsui_2427 0.87 -0.9
2,587,857 - -1.6
2,587,916 - -0.7
2,588,223 + Dsui_2428 0.24 +0.3
2,588,287 - +1.3
2,588,332 + Dsui_2428 0.47 +0.7
2,588,401 + Dsui_2428 0.62 +1.4
2,588,540 + +1.3
2,588,543 - +3.3
2,588,610 - +0.3
2,588,662 + +0.1
2,588,667 + +0.3
2,588,678 - +1.3
2,588,695 + Dsui_2429 0.10 -0.3
2,588,739 + Dsui_2429 0.14 -0.7

Or see this region's nucleotide sequence