Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2405 and Dsui_2406 are separated by 199 nucleotides Dsui_2406 and Dsui_2407 are separated by 12 nucleotides Dsui_2407 and Dsui_2408 overlap by 1 nucleotides Dsui_2408 and Dsui_2409 are separated by 15 nucleotides
Dsui_2405: Dsui_2405 - uracil-DNA glycosylase, family 4, at 2,556,837 to 2,557,694
_2405
Dsui_2406: Dsui_2406 - hypothetical protein, at 2,557,894 to 2,558,496
_2406
Dsui_2407: Dsui_2407 - beta-propeller domain-containing protein, methanol dehydrogenase, at 2,558,509 to 2,559,339
_2407
Dsui_2408: Dsui_2408 - putative membrane protein, at 2,559,339 to 2,559,845
_2408
Dsui_2409: Dsui_2409 - Major Facilitator Superfamily transporter, at 2,559,861 to 2,561,126
_2409
Position (kb)
2558
2559
2560 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2557.699 kb on + strand at 2557.896 kb on - strand at 2557.896 kb on - strand at 2557.938 kb on + strand at 2557.941 kb on - strand at 2557.946 kb on - strand at 2557.976 kb on - strand at 2557.983 kb on + strand, within Dsui_2406 at 2557.983 kb on + strand, within Dsui_2406 at 2557.983 kb on + strand, within Dsui_2406 at 2557.983 kb on + strand, within Dsui_2406 at 2557.991 kb on - strand at 2557.991 kb on - strand at 2557.991 kb on - strand, within Dsui_2406 at 2558.064 kb on + strand, within Dsui_2406 at 2558.067 kb on - strand at 2558.072 kb on - strand at 2558.177 kb on + strand, within Dsui_2406 at 2558.195 kb on - strand at 2558.238 kb on + strand, within Dsui_2406 at 2558.243 kb on + strand, within Dsui_2406 at 2558.288 kb on + strand, within Dsui_2406 at 2558.420 kb on - strand, within Dsui_2406 at 2558.445 kb on + strand at 2558.448 kb on + strand at 2558.738 kb on + strand at 2558.745 kb on + strand, within Dsui_2407 at 2558.753 kb on + strand at 2558.791 kb on + strand, within Dsui_2407 at 2559.041 kb on + strand, within Dsui_2407 at 2559.041 kb on + strand, within Dsui_2407 at 2559.178 kb on - strand, within Dsui_2407 at 2559.208 kb on + strand, within Dsui_2407 at 2559.208 kb on - strand at 2559.451 kb on + strand, within Dsui_2408 at 2559.454 kb on + strand, within Dsui_2408 at 2559.512 kb on - strand, within Dsui_2408 at 2559.512 kb on - strand, within Dsui_2408 at 2559.548 kb on - strand, within Dsui_2408 at 2559.555 kb on - strand, within Dsui_2408 at 2559.593 kb on - strand, within Dsui_2408 at 2559.593 kb on - strand, within Dsui_2408 at 2559.593 kb on - strand at 2559.593 kb on - strand, within Dsui_2408 at 2559.610 kb on + strand, within Dsui_2408 at 2559.610 kb on + strand, within Dsui_2408 at 2559.610 kb on + strand, within Dsui_2408 at 2559.618 kb on - strand at 2559.618 kb on - strand, within Dsui_2408 at 2559.618 kb on - strand at 2559.618 kb on - strand, within Dsui_2408 at 2559.676 kb on - strand, within Dsui_2408 at 2559.703 kb on + strand, within Dsui_2408 at 2559.703 kb on + strand, within Dsui_2408 at 2559.772 kb on - strand, within Dsui_2408 at 2559.790 kb on + strand, within Dsui_2408 at 2559.849 kb on - strand at 2559.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,557,699 + +1.1 2,557,896 - +2.3 2,557,896 - +2.3 2,557,938 + +0.5 2,557,941 - +0.7 2,557,946 - +2.3 2,557,976 - +1.3 2,557,983 + Dsui_2406 0.15 -1.0 2,557,983 + Dsui_2406 0.15 -1.1 2,557,983 + Dsui_2406 0.15 +0.1 2,557,983 + Dsui_2406 0.15 +0.1 2,557,991 - +0.7 2,557,991 - +1.3 2,557,991 - Dsui_2406 0.16 -0.5 2,558,064 + Dsui_2406 0.28 +0.4 2,558,067 - -0.3 2,558,072 - +1.3 2,558,177 + Dsui_2406 0.47 +0.2 2,558,195 - -0.0 2,558,238 + Dsui_2406 0.57 -0.4 2,558,243 + Dsui_2406 0.58 -0.7 2,558,288 + Dsui_2406 0.65 -1.0 2,558,420 - Dsui_2406 0.87 -0.0 2,558,445 + -0.3 2,558,448 + +1.1 2,558,738 + -0.0 2,558,745 + Dsui_2407 0.28 +1.1 2,558,753 + +1.3 2,558,791 + Dsui_2407 0.34 -0.3 2,559,041 + Dsui_2407 0.64 +1.3 2,559,041 + Dsui_2407 0.64 +0.4 2,559,178 - Dsui_2407 0.81 +1.3 2,559,208 + Dsui_2407 0.84 +0.9 2,559,208 - +1.3 2,559,451 + Dsui_2408 0.22 +0.4 2,559,454 + Dsui_2408 0.23 -0.4 2,559,512 - Dsui_2408 0.34 +1.9 2,559,512 - Dsui_2408 0.34 -0.6 2,559,548 - Dsui_2408 0.41 -1.4 2,559,555 - Dsui_2408 0.43 -1.4 2,559,593 - Dsui_2408 0.50 +0.3 2,559,593 - Dsui_2408 0.50 -0.2 2,559,593 - +1.3 2,559,593 - Dsui_2408 0.50 -1.8 2,559,610 + Dsui_2408 0.53 +0.2 2,559,610 + Dsui_2408 0.53 +1.1 2,559,610 + Dsui_2408 0.53 +0.1 2,559,618 - +0.3 2,559,618 - Dsui_2408 0.55 -0.9 2,559,618 - +2.3 2,559,618 - Dsui_2408 0.55 -0.0 2,559,676 - Dsui_2408 0.66 -0.7 2,559,703 + Dsui_2408 0.72 -0.0 2,559,703 + Dsui_2408 0.72 -0.5 2,559,772 - Dsui_2408 0.85 +0.4 2,559,790 + Dsui_2408 0.89 +0.4 2,559,849 - +0.5 2,559,862 - +0.0
Or see this region's nucleotide sequence