Strain Fitness in Dechlorosoma suillum PS around Dsui_2406

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2405 and Dsui_2406 are separated by 199 nucleotidesDsui_2406 and Dsui_2407 are separated by 12 nucleotidesDsui_2407 and Dsui_2408 overlap by 1 nucleotides Dsui_2405: Dsui_2405 - uracil-DNA glycosylase, family 4, at 2,556,837 to 2,557,694 _2405 Dsui_2406: Dsui_2406 - hypothetical protein, at 2,557,894 to 2,558,496 _2406 Dsui_2407: Dsui_2407 - beta-propeller domain-containing protein, methanol dehydrogenase, at 2,558,509 to 2,559,339 _2407 Dsui_2408: Dsui_2408 - putative membrane protein, at 2,559,339 to 2,559,845 _2408 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -1 0 1 2at 2557.699 kb on + strandat 2557.896 kb on - strandat 2557.896 kb on - strandat 2557.938 kb on + strandat 2557.941 kb on - strandat 2557.946 kb on - strandat 2557.976 kb on - strandat 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.983 kb on + strand, within Dsui_2406at 2557.991 kb on - strandat 2557.991 kb on - strandat 2557.991 kb on - strand, within Dsui_2406at 2558.064 kb on + strand, within Dsui_2406at 2558.067 kb on - strandat 2558.072 kb on - strandat 2558.177 kb on + strand, within Dsui_2406at 2558.195 kb on - strandat 2558.238 kb on + strand, within Dsui_2406at 2558.243 kb on + strand, within Dsui_2406at 2558.288 kb on + strand, within Dsui_2406at 2558.420 kb on - strand, within Dsui_2406at 2558.445 kb on + strandat 2558.448 kb on + strandat 2558.738 kb on + strandat 2558.745 kb on + strand, within Dsui_2407at 2558.753 kb on + strandat 2558.791 kb on + strand, within Dsui_2407at 2559.041 kb on + strand, within Dsui_2407at 2559.041 kb on + strand, within Dsui_2407at 2559.178 kb on - strand, within Dsui_2407at 2559.208 kb on + strand, within Dsui_2407at 2559.208 kb on - strandat 2559.451 kb on + strand, within Dsui_2408at 2559.454 kb on + strand, within Dsui_2408

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,557,699 + +1.1
2,557,896 - +2.3
2,557,896 - +2.3
2,557,938 + +0.5
2,557,941 - +0.7
2,557,946 - +2.3
2,557,976 - +1.3
2,557,983 + Dsui_2406 0.15 -1.0
2,557,983 + Dsui_2406 0.15 -1.1
2,557,983 + Dsui_2406 0.15 +0.1
2,557,983 + Dsui_2406 0.15 +0.1
2,557,991 - +0.7
2,557,991 - +1.3
2,557,991 - Dsui_2406 0.16 -0.5
2,558,064 + Dsui_2406 0.28 +0.4
2,558,067 - -0.3
2,558,072 - +1.3
2,558,177 + Dsui_2406 0.47 +0.2
2,558,195 - -0.0
2,558,238 + Dsui_2406 0.57 -0.4
2,558,243 + Dsui_2406 0.58 -0.7
2,558,288 + Dsui_2406 0.65 -1.0
2,558,420 - Dsui_2406 0.87 -0.0
2,558,445 + -0.3
2,558,448 + +1.1
2,558,738 + -0.0
2,558,745 + Dsui_2407 0.28 +1.1
2,558,753 + +1.3
2,558,791 + Dsui_2407 0.34 -0.3
2,559,041 + Dsui_2407 0.64 +1.3
2,559,041 + Dsui_2407 0.64 +0.4
2,559,178 - Dsui_2407 0.81 +1.3
2,559,208 + Dsui_2407 0.84 +0.9
2,559,208 - +1.3
2,559,451 + Dsui_2408 0.22 +0.4
2,559,454 + Dsui_2408 0.23 -0.4

Or see this region's nucleotide sequence