Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2356 and Dsui_2357 are separated by 76 nucleotides Dsui_2357 and Dsui_2358 are separated by 98 nucleotides Dsui_2358 and Dsui_2359 are separated by 39 nucleotides Dsui_2359 and Dsui_2360 are separated by 2 nucleotides
Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124
_2356
Dsui_2357: Dsui_2357 - hypothetical protein, at 2,508,201 to 2,508,767
_2357
Dsui_2358: Dsui_2358 - signal transduction histidine kinase, at 2,508,866 to 2,510,302
_2358
Dsui_2359: Dsui_2359 - hypothetical protein, at 2,510,342 to 2,510,794
_2359
Dsui_2360: Dsui_2360 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,510,797 to 2,512,158
_2360
Position (kb)
2508
2509
2510
2511 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2507.909 kb on + strand at 2508.118 kb on + strand at 2508.148 kb on + strand at 2508.159 kb on + strand at 2508.169 kb on + strand at 2508.292 kb on + strand at 2508.466 kb on - strand at 2508.595 kb on + strand, within Dsui_2357 at 2508.837 kb on + strand at 2509.014 kb on + strand, within Dsui_2358 at 2509.120 kb on + strand, within Dsui_2358 at 2509.285 kb on - strand at 2509.314 kb on - strand at 2509.753 kb on + strand, within Dsui_2358 at 2509.808 kb on + strand, within Dsui_2358 at 2510.000 kb on + strand, within Dsui_2358 at 2510.012 kb on + strand at 2510.036 kb on + strand, within Dsui_2358 at 2510.127 kb on + strand, within Dsui_2358 at 2510.321 kb on + strand at 2510.466 kb on - strand at 2510.516 kb on + strand, within Dsui_2359 at 2510.599 kb on + strand, within Dsui_2359 at 2510.668 kb on + strand, within Dsui_2359 at 2510.672 kb on - strand at 2510.802 kb on - strand at 2510.975 kb on + strand, within Dsui_2360 at 2511.202 kb on + strand, within Dsui_2360
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,507,909 + -0.0 2,508,118 + +2.3 2,508,148 + +2.3 2,508,159 + +2.3 2,508,169 + +0.7 2,508,292 + +0.3 2,508,466 - +0.7 2,508,595 + Dsui_2357 0.69 -0.9 2,508,837 + -0.3 2,509,014 + Dsui_2358 0.10 -1.2 2,509,120 + Dsui_2358 0.18 -0.4 2,509,285 - +1.0 2,509,314 - +2.3 2,509,753 + Dsui_2358 0.62 -1.4 2,509,808 + Dsui_2358 0.66 -2.2 2,510,000 + Dsui_2358 0.79 -1.2 2,510,012 + +1.3 2,510,036 + Dsui_2358 0.81 -0.3 2,510,127 + Dsui_2358 0.88 -0.0 2,510,321 + -1.6 2,510,466 - +2.3 2,510,516 + Dsui_2359 0.38 +0.4 2,510,599 + Dsui_2359 0.57 -0.2 2,510,668 + Dsui_2359 0.72 +0.5 2,510,672 - +1.3 2,510,802 - +0.7 2,510,975 + Dsui_2360 0.13 -0.1 2,511,202 + Dsui_2360 0.30 +0.2
Or see this region's nucleotide sequence