Strain Fitness in Dechlorosoma suillum PS around Dsui_2358

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2356 and Dsui_2357 are separated by 76 nucleotidesDsui_2357 and Dsui_2358 are separated by 98 nucleotidesDsui_2358 and Dsui_2359 are separated by 39 nucleotidesDsui_2359 and Dsui_2360 are separated by 2 nucleotides Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124 _2356 Dsui_2357: Dsui_2357 - hypothetical protein, at 2,508,201 to 2,508,767 _2357 Dsui_2358: Dsui_2358 - signal transduction histidine kinase, at 2,508,866 to 2,510,302 _2358 Dsui_2359: Dsui_2359 - hypothetical protein, at 2,510,342 to 2,510,794 _2359 Dsui_2360: Dsui_2360 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,510,797 to 2,512,158 _2360 Position (kb) 2508 2509 2510 2511Strain fitness (log2 ratio) -2 -1 0 1 2at 2507.909 kb on + strandat 2508.118 kb on + strandat 2508.148 kb on + strandat 2508.159 kb on + strandat 2508.169 kb on + strandat 2508.292 kb on + strandat 2508.466 kb on - strandat 2508.595 kb on + strand, within Dsui_2357at 2508.837 kb on + strandat 2509.014 kb on + strand, within Dsui_2358at 2509.120 kb on + strand, within Dsui_2358at 2509.285 kb on - strandat 2509.314 kb on - strandat 2509.753 kb on + strand, within Dsui_2358at 2509.808 kb on + strand, within Dsui_2358at 2510.000 kb on + strand, within Dsui_2358at 2510.012 kb on + strandat 2510.036 kb on + strand, within Dsui_2358at 2510.127 kb on + strand, within Dsui_2358at 2510.321 kb on + strandat 2510.466 kb on - strandat 2510.516 kb on + strand, within Dsui_2359at 2510.599 kb on + strand, within Dsui_2359at 2510.668 kb on + strand, within Dsui_2359at 2510.672 kb on - strandat 2510.802 kb on - strandat 2510.975 kb on + strand, within Dsui_2360at 2511.202 kb on + strand, within Dsui_2360

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,507,909 + -0.0
2,508,118 + +2.3
2,508,148 + +2.3
2,508,159 + +2.3
2,508,169 + +0.7
2,508,292 + +0.3
2,508,466 - +0.7
2,508,595 + Dsui_2357 0.69 -0.9
2,508,837 + -0.3
2,509,014 + Dsui_2358 0.10 -1.2
2,509,120 + Dsui_2358 0.18 -0.4
2,509,285 - +1.0
2,509,314 - +2.3
2,509,753 + Dsui_2358 0.62 -1.4
2,509,808 + Dsui_2358 0.66 -2.2
2,510,000 + Dsui_2358 0.79 -1.2
2,510,012 + +1.3
2,510,036 + Dsui_2358 0.81 -0.3
2,510,127 + Dsui_2358 0.88 -0.0
2,510,321 + -1.6
2,510,466 - +2.3
2,510,516 + Dsui_2359 0.38 +0.4
2,510,599 + Dsui_2359 0.57 -0.2
2,510,668 + Dsui_2359 0.72 +0.5
2,510,672 - +1.3
2,510,802 - +0.7
2,510,975 + Dsui_2360 0.13 -0.1
2,511,202 + Dsui_2360 0.30 +0.2

Or see this region's nucleotide sequence