Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2259 and Dsui_2260 are separated by 348 nucleotides Dsui_2260 and Dsui_2261 are separated by 93 nucleotides Dsui_2261 and Dsui_2262 are separated by 69 nucleotides
Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921
_2258
Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198
_2259
Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013
_2260
Dsui_2261: Dsui_2261 - putative flavin-nucleotide-binding protein, at 2,410,107 to 2,410,820
_2261
Dsui_2262: Dsui_2262 - hypothetical protein, at 2,410,890 to 2,411,495
_2262
Position (kb)
2408
2409
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2407.580 kb on - strand at 2407.614 kb on - strand at 2407.627 kb on + strand, within Dsui_2258 at 2407.982 kb on - strand at 2408.011 kb on - strand at 2408.059 kb on - strand, within Dsui_2259 at 2408.157 kb on - strand, within Dsui_2259 at 2408.191 kb on - strand at 2408.193 kb on - strand at 2408.590 kb on - strand at 2408.634 kb on + strand at 2408.639 kb on + strand at 2408.686 kb on - strand at 2408.766 kb on + strand at 2408.892 kb on - strand at 2408.939 kb on - strand at 2408.942 kb on + strand at 2408.996 kb on + strand, within Dsui_2260 at 2408.999 kb on + strand at 2409.004 kb on - strand, within Dsui_2260 at 2409.015 kb on - strand, within Dsui_2260 at 2409.022 kb on + strand at 2409.025 kb on - strand at 2409.135 kb on - strand at 2409.221 kb on + strand at 2409.237 kb on - strand, within Dsui_2260 at 2409.304 kb on - strand, within Dsui_2260 at 2409.416 kb on + strand at 2409.424 kb on - strand at 2409.424 kb on - strand, within Dsui_2260 at 2409.426 kb on + strand at 2409.482 kb on - strand at 2409.518 kb on - strand, within Dsui_2260 at 2409.563 kb on + strand, within Dsui_2260 at 2409.586 kb on - strand at 2409.650 kb on - strand at 2409.668 kb on - strand at 2409.781 kb on - strand at 2409.787 kb on + strand at 2409.818 kb on - strand at 2409.981 kb on - strand at 2410.111 kb on + strand at 2410.125 kb on + strand at 2410.126 kb on + strand at 2410.161 kb on - strand at 2410.247 kb on + strand at 2410.247 kb on + strand at 2410.267 kb on + strand at 2410.356 kb on + strand at 2410.408 kb on + strand at 2410.408 kb on + strand at 2410.436 kb on - strand at 2410.458 kb on + strand at 2410.591 kb on - strand at 2410.676 kb on - strand at 2410.761 kb on + strand at 2410.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,407,580 - -0.4 2,407,614 - -1.0 2,407,627 + Dsui_2258 0.12 -0.4 2,407,982 - -0.1 2,408,011 - -1.3 2,408,059 - Dsui_2259 0.27 -2.4 2,408,157 - Dsui_2259 0.78 -0.3 2,408,191 - -2.5 2,408,193 - -0.6 2,408,590 - +0.7 2,408,634 + +0.3 2,408,639 + +0.7 2,408,686 - -1.7 2,408,766 + +2.3 2,408,892 - +2.3 2,408,939 - +1.3 2,408,942 + +2.3 2,408,996 + Dsui_2260 0.31 -0.3 2,408,999 + +0.3 2,409,004 - Dsui_2260 0.31 -0.5 2,409,015 - Dsui_2260 0.32 -1.0 2,409,022 + +1.3 2,409,025 - +2.3 2,409,135 - +0.3 2,409,221 + +2.3 2,409,237 - Dsui_2260 0.47 -0.9 2,409,304 - Dsui_2260 0.52 -1.5 2,409,416 + +2.3 2,409,424 - +2.3 2,409,424 - Dsui_2260 0.60 -0.3 2,409,426 + +2.3 2,409,482 - +0.3 2,409,518 - Dsui_2260 0.66 +0.3 2,409,563 + Dsui_2260 0.69 +0.3 2,409,586 - -0.3 2,409,650 - +2.3 2,409,668 - +1.3 2,409,781 - +0.3 2,409,787 + +1.7 2,409,818 - +2.3 2,409,981 - +0.7 2,410,111 + +2.3 2,410,125 + +2.3 2,410,126 + +2.3 2,410,161 - +2.3 2,410,247 + +2.3 2,410,247 + +1.3 2,410,267 + +0.3 2,410,356 + +1.3 2,410,408 + +2.3 2,410,408 + +1.6 2,410,436 - +1.3 2,410,458 + +1.3 2,410,591 - +1.3 2,410,676 - +1.3 2,410,761 + +1.3 2,410,769 - -0.3
Or see this region's nucleotide sequence