Strain Fitness in Dechlorosoma suillum PS around Dsui_2260

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2258 and Dsui_2259 are separated by 85 nucleotidesDsui_2259 and Dsui_2260 are separated by 348 nucleotidesDsui_2260 and Dsui_2261 are separated by 93 nucleotidesDsui_2261 and Dsui_2262 are separated by 69 nucleotides Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921 _2258 Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198 _2259 Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013 _2260 Dsui_2261: Dsui_2261 - putative flavin-nucleotide-binding protein, at 2,410,107 to 2,410,820 _2261 Dsui_2262: Dsui_2262 - hypothetical protein, at 2,410,890 to 2,411,495 _2262 Position (kb) 2408 2409 2410 2411Strain fitness (log2 ratio) -2 -1 0 1 2at 2407.580 kb on - strandat 2407.614 kb on - strandat 2407.627 kb on + strand, within Dsui_2258at 2407.982 kb on - strandat 2408.011 kb on - strandat 2408.059 kb on - strand, within Dsui_2259at 2408.157 kb on - strand, within Dsui_2259at 2408.191 kb on - strandat 2408.193 kb on - strandat 2408.590 kb on - strandat 2408.634 kb on + strandat 2408.639 kb on + strandat 2408.686 kb on - strandat 2408.766 kb on + strandat 2408.892 kb on - strandat 2408.939 kb on - strandat 2408.942 kb on + strandat 2408.996 kb on + strand, within Dsui_2260at 2408.999 kb on + strandat 2409.004 kb on - strand, within Dsui_2260at 2409.015 kb on - strand, within Dsui_2260at 2409.022 kb on + strandat 2409.025 kb on - strandat 2409.135 kb on - strandat 2409.221 kb on + strandat 2409.237 kb on - strand, within Dsui_2260at 2409.304 kb on - strand, within Dsui_2260at 2409.416 kb on + strandat 2409.424 kb on - strandat 2409.424 kb on - strand, within Dsui_2260at 2409.426 kb on + strandat 2409.482 kb on - strandat 2409.518 kb on - strand, within Dsui_2260at 2409.563 kb on + strand, within Dsui_2260at 2409.586 kb on - strandat 2409.650 kb on - strandat 2409.668 kb on - strandat 2409.781 kb on - strandat 2409.787 kb on + strandat 2409.818 kb on - strandat 2409.981 kb on - strandat 2410.111 kb on + strandat 2410.125 kb on + strandat 2410.126 kb on + strandat 2410.161 kb on - strandat 2410.247 kb on + strandat 2410.247 kb on + strandat 2410.267 kb on + strandat 2410.356 kb on + strandat 2410.408 kb on + strandat 2410.408 kb on + strandat 2410.436 kb on - strandat 2410.458 kb on + strandat 2410.591 kb on - strandat 2410.676 kb on - strandat 2410.761 kb on + strandat 2410.769 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
2,407,580 - -0.4
2,407,614 - -1.0
2,407,627 + Dsui_2258 0.12 -0.4
2,407,982 - -0.1
2,408,011 - -1.3
2,408,059 - Dsui_2259 0.27 -2.4
2,408,157 - Dsui_2259 0.78 -0.3
2,408,191 - -2.5
2,408,193 - -0.6
2,408,590 - +0.7
2,408,634 + +0.3
2,408,639 + +0.7
2,408,686 - -1.7
2,408,766 + +2.3
2,408,892 - +2.3
2,408,939 - +1.3
2,408,942 + +2.3
2,408,996 + Dsui_2260 0.31 -0.3
2,408,999 + +0.3
2,409,004 - Dsui_2260 0.31 -0.5
2,409,015 - Dsui_2260 0.32 -1.0
2,409,022 + +1.3
2,409,025 - +2.3
2,409,135 - +0.3
2,409,221 + +2.3
2,409,237 - Dsui_2260 0.47 -0.9
2,409,304 - Dsui_2260 0.52 -1.5
2,409,416 + +2.3
2,409,424 - +2.3
2,409,424 - Dsui_2260 0.60 -0.3
2,409,426 + +2.3
2,409,482 - +0.3
2,409,518 - Dsui_2260 0.66 +0.3
2,409,563 + Dsui_2260 0.69 +0.3
2,409,586 - -0.3
2,409,650 - +2.3
2,409,668 - +1.3
2,409,781 - +0.3
2,409,787 + +1.7
2,409,818 - +2.3
2,409,981 - +0.7
2,410,111 + +2.3
2,410,125 + +2.3
2,410,126 + +2.3
2,410,161 - +2.3
2,410,247 + +2.3
2,410,247 + +1.3
2,410,267 + +0.3
2,410,356 + +1.3
2,410,408 + +2.3
2,410,408 + +1.6
2,410,436 - +1.3
2,410,458 + +1.3
2,410,591 - +1.3
2,410,676 - +1.3
2,410,761 + +1.3
2,410,769 - -0.3

Or see this region's nucleotide sequence