Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2249 and Dsui_2250 are separated by 60 nucleotides Dsui_2250 and Dsui_2251 are separated by 92 nucleotides
Dsui_2249: Dsui_2249 - signal transduction histidine kinase, at 2,395,892 to 2,397,259
_2249
Dsui_2250: Dsui_2250 - putative domain HDIG-containing protein, at 2,397,320 to 2,398,582
_2250
Dsui_2251: Dsui_2251 - signal transduction histidine kinase, at 2,398,675 to 2,400,147
_2251
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2396.369 kb on + strand, within Dsui_2249 at 2396.461 kb on - strand at 2396.467 kb on + strand, within Dsui_2249 at 2396.524 kb on - strand at 2396.539 kb on + strand, within Dsui_2249 at 2396.539 kb on + strand, within Dsui_2249 at 2396.539 kb on + strand at 2396.539 kb on + strand, within Dsui_2249 at 2396.547 kb on - strand at 2396.547 kb on - strand, within Dsui_2249 at 2396.547 kb on - strand at 2396.603 kb on + strand, within Dsui_2249 at 2396.611 kb on - strand at 2397.113 kb on + strand, within Dsui_2249 at 2397.114 kb on + strand, within Dsui_2249 at 2397.206 kb on + strand at 2397.291 kb on - strand at 2397.301 kb on - strand at 2397.326 kb on + strand at 2397.365 kb on + strand at 2397.479 kb on + strand, within Dsui_2250 at 2397.513 kb on + strand, within Dsui_2250 at 2397.513 kb on + strand at 2397.999 kb on + strand, within Dsui_2250 at 2398.056 kb on - strand at 2398.157 kb on + strand at 2398.251 kb on + strand, within Dsui_2250 at 2398.260 kb on - strand at 2398.342 kb on + strand at 2398.432 kb on - strand at 2398.469 kb on - strand at 2398.596 kb on + strand at 2398.610 kb on + strand at 2398.611 kb on + strand at 2398.713 kb on + strand at 2399.148 kb on + strand at 2399.258 kb on - strand, within Dsui_2251 at 2399.297 kb on + strand at 2399.525 kb on - strand, within Dsui_2251 at 2399.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,396,369 + Dsui_2249 0.35 -1.8 2,396,461 - -0.0 2,396,467 + Dsui_2249 0.42 -0.4 2,396,524 - +0.7 2,396,539 + Dsui_2249 0.47 -1.1 2,396,539 + Dsui_2249 0.47 -1.2 2,396,539 + +1.3 2,396,539 + Dsui_2249 0.47 -0.5 2,396,547 - +1.3 2,396,547 - Dsui_2249 0.48 -0.7 2,396,547 - +2.3 2,396,603 + Dsui_2249 0.52 +1.3 2,396,611 - +0.7 2,397,113 + Dsui_2249 0.89 -0.9 2,397,114 + Dsui_2249 0.89 +0.9 2,397,206 + +3.3 2,397,291 - +2.3 2,397,301 - +2.3 2,397,326 + -0.1 2,397,365 + +0.2 2,397,479 + Dsui_2250 0.13 +0.7 2,397,513 + Dsui_2250 0.15 -1.0 2,397,513 + +0.7 2,397,999 + Dsui_2250 0.54 +0.1 2,398,056 - +2.3 2,398,157 + +1.3 2,398,251 + Dsui_2250 0.74 +0.4 2,398,260 - +1.3 2,398,342 + +0.7 2,398,432 - +0.3 2,398,469 - +0.3 2,398,596 + -0.0 2,398,610 + +1.3 2,398,611 + +1.6 2,398,713 + +0.5 2,399,148 + +1.3 2,399,258 - Dsui_2251 0.40 -0.8 2,399,297 + +2.3 2,399,525 - Dsui_2251 0.58 -0.5 2,399,572 - +2.3
Or see this region's nucleotide sequence