Strain Fitness in Dechlorosoma suillum PS around Dsui_2250

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2249 and Dsui_2250 are separated by 60 nucleotidesDsui_2250 and Dsui_2251 are separated by 92 nucleotides Dsui_2249: Dsui_2249 - signal transduction histidine kinase, at 2,395,892 to 2,397,259 _2249 Dsui_2250: Dsui_2250 - putative domain HDIG-containing protein, at 2,397,320 to 2,398,582 _2250 Dsui_2251: Dsui_2251 - signal transduction histidine kinase, at 2,398,675 to 2,400,147 _2251 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2396.369 kb on + strand, within Dsui_2249at 2396.461 kb on - strandat 2396.467 kb on + strand, within Dsui_2249at 2396.524 kb on - strandat 2396.539 kb on + strand, within Dsui_2249at 2396.539 kb on + strand, within Dsui_2249at 2396.539 kb on + strandat 2396.539 kb on + strand, within Dsui_2249at 2396.547 kb on - strandat 2396.547 kb on - strand, within Dsui_2249at 2396.547 kb on - strandat 2396.603 kb on + strand, within Dsui_2249at 2396.611 kb on - strandat 2397.113 kb on + strand, within Dsui_2249at 2397.114 kb on + strand, within Dsui_2249at 2397.206 kb on + strandat 2397.291 kb on - strandat 2397.301 kb on - strandat 2397.326 kb on + strandat 2397.365 kb on + strandat 2397.479 kb on + strand, within Dsui_2250at 2397.513 kb on + strand, within Dsui_2250at 2397.513 kb on + strandat 2397.999 kb on + strand, within Dsui_2250at 2398.056 kb on - strandat 2398.157 kb on + strandat 2398.251 kb on + strand, within Dsui_2250at 2398.260 kb on - strandat 2398.342 kb on + strandat 2398.432 kb on - strandat 2398.469 kb on - strandat 2398.596 kb on + strandat 2398.610 kb on + strandat 2398.611 kb on + strandat 2398.713 kb on + strandat 2399.148 kb on + strandat 2399.258 kb on - strand, within Dsui_2251at 2399.297 kb on + strandat 2399.525 kb on - strand, within Dsui_2251at 2399.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,396,369 + Dsui_2249 0.35 -1.8
2,396,461 - -0.0
2,396,467 + Dsui_2249 0.42 -0.4
2,396,524 - +0.7
2,396,539 + Dsui_2249 0.47 -1.1
2,396,539 + Dsui_2249 0.47 -1.2
2,396,539 + +1.3
2,396,539 + Dsui_2249 0.47 -0.5
2,396,547 - +1.3
2,396,547 - Dsui_2249 0.48 -0.7
2,396,547 - +2.3
2,396,603 + Dsui_2249 0.52 +1.3
2,396,611 - +0.7
2,397,113 + Dsui_2249 0.89 -0.9
2,397,114 + Dsui_2249 0.89 +0.9
2,397,206 + +3.3
2,397,291 - +2.3
2,397,301 - +2.3
2,397,326 + -0.1
2,397,365 + +0.2
2,397,479 + Dsui_2250 0.13 +0.7
2,397,513 + Dsui_2250 0.15 -1.0
2,397,513 + +0.7
2,397,999 + Dsui_2250 0.54 +0.1
2,398,056 - +2.3
2,398,157 + +1.3
2,398,251 + Dsui_2250 0.74 +0.4
2,398,260 - +1.3
2,398,342 + +0.7
2,398,432 - +0.3
2,398,469 - +0.3
2,398,596 + -0.0
2,398,610 + +1.3
2,398,611 + +1.6
2,398,713 + +0.5
2,399,148 + +1.3
2,399,258 - Dsui_2251 0.40 -0.8
2,399,297 + +2.3
2,399,525 - Dsui_2251 0.58 -0.5
2,399,572 - +2.3

Or see this region's nucleotide sequence