Strain Fitness in Dechlorosoma suillum PS around Dsui_2248

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2246 and Dsui_2247 are separated by 9 nucleotidesDsui_2247 and Dsui_2248 are separated by 40 nucleotidesDsui_2248 and Dsui_2249 overlap by 4 nucleotides Dsui_2246: Dsui_2246 - Diheme cytochrome c, at 2,394,029 to 2,394,508 _2246 Dsui_2247: Dsui_2247 - cytochrome b, at 2,394,518 to 2,395,177 _2247 Dsui_2248: Dsui_2248 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,395,218 to 2,395,895 _2248 Dsui_2249: Dsui_2249 - signal transduction histidine kinase, at 2,395,892 to 2,397,259 _2249 Position (kb) 2395 2396Strain fitness (log2 ratio) -2 -1 0 1 2at 2394.277 kb on - strandat 2394.312 kb on + strand, within Dsui_2246at 2394.438 kb on - strandat 2394.628 kb on - strandat 2394.993 kb on - strand, within Dsui_2247at 2395.084 kb on - strandat 2395.194 kb on + strandat 2395.530 kb on - strandat 2395.698 kb on + strand, within Dsui_2248at 2395.724 kb on + strand, within Dsui_2248at 2395.755 kb on + strand, within Dsui_2248at 2395.755 kb on + strand, within Dsui_2248at 2395.783 kb on + strandat 2395.902 kb on + strandat 2395.902 kb on + strandat 2395.925 kb on + strandat 2395.954 kb on + strandat 2396.022 kb on - strandat 2396.297 kb on + strand, within Dsui_2249at 2396.305 kb on - strand, within Dsui_2249at 2396.369 kb on + strand, within Dsui_2249at 2396.461 kb on - strandat 2396.467 kb on + strand, within Dsui_2249at 2396.524 kb on - strandat 2396.539 kb on + strand, within Dsui_2249at 2396.539 kb on + strand, within Dsui_2249at 2396.539 kb on + strandat 2396.539 kb on + strand, within Dsui_2249at 2396.547 kb on - strandat 2396.547 kb on - strand, within Dsui_2249at 2396.547 kb on - strandat 2396.603 kb on + strand, within Dsui_2249at 2396.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,394,277 - -0.0
2,394,312 + Dsui_2246 0.59 +0.7
2,394,438 - +1.3
2,394,628 - +2.3
2,394,993 - Dsui_2247 0.72 -1.4
2,395,084 - +0.7
2,395,194 + -0.5
2,395,530 - +0.7
2,395,698 + Dsui_2248 0.71 +0.4
2,395,724 + Dsui_2248 0.75 -1.4
2,395,755 + Dsui_2248 0.79 -0.9
2,395,755 + Dsui_2248 0.79 +2.0
2,395,783 + +0.7
2,395,902 + -0.8
2,395,902 + -0.5
2,395,925 + -1.9
2,395,954 + +0.7
2,396,022 - -0.0
2,396,297 + Dsui_2249 0.30 +0.7
2,396,305 - Dsui_2249 0.30 -1.2
2,396,369 + Dsui_2249 0.35 -1.8
2,396,461 - -0.0
2,396,467 + Dsui_2249 0.42 -0.4
2,396,524 - +0.7
2,396,539 + Dsui_2249 0.47 -1.1
2,396,539 + Dsui_2249 0.47 -1.2
2,396,539 + +1.3
2,396,539 + Dsui_2249 0.47 -0.5
2,396,547 - +1.3
2,396,547 - Dsui_2249 0.48 -0.7
2,396,547 - +2.3
2,396,603 + Dsui_2249 0.52 +1.3
2,396,611 - +0.7

Or see this region's nucleotide sequence