Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2209 and Dsui_2210 are separated by 188 nucleotides Dsui_2210 and Dsui_2211 are separated by 130 nucleotides Dsui_2211 and Dsui_2212 overlap by 7 nucleotides Dsui_2212 and Dsui_2213 are separated by 3 nucleotides
Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163
_2209
Dsui_2210: Dsui_2210 - transcriptional regulator, at 2,349,352 to 2,350,092
_2210
Dsui_2211: Dsui_2211 - succinate dehydrogenase, cytochrome b556 subunit, at 2,350,223 to 2,350,615
_2211
Dsui_2212: Dsui_2212 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,350,609 to 2,350,956
_2212
Dsui_2213: Dsui_2213 - succinate dehydrogenase, flavoprotein subunit, at 2,350,960 to 2,352,753
_2213
Position (kb)
2349
2350
2351 Strain fitness (log2 ratio)
-1
0
1 at 2349.289 kb on - strand at 2349.338 kb on + strand at 2349.338 kb on + strand at 2349.348 kb on + strand at 2349.368 kb on + strand at 2349.375 kb on + strand at 2349.383 kb on + strand at 2349.428 kb on + strand, within Dsui_2210 at 2349.439 kb on + strand, within Dsui_2210 at 2349.506 kb on + strand, within Dsui_2210 at 2349.589 kb on + strand, within Dsui_2210 at 2349.702 kb on + strand, within Dsui_2210 at 2349.703 kb on + strand, within Dsui_2210 at 2349.862 kb on + strand, within Dsui_2210 at 2349.977 kb on + strand, within Dsui_2210 at 2349.987 kb on + strand, within Dsui_2210 at 2350.081 kb on + strand at 2350.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,349,289 - -0.7 2,349,338 + -0.3 2,349,338 + -0.8 2,349,348 + +0.0 2,349,368 + +0.3 2,349,375 + +0.1 2,349,383 + +0.6 2,349,428 + Dsui_2210 0.10 -0.5 2,349,439 + Dsui_2210 0.12 +0.0 2,349,506 + Dsui_2210 0.21 +0.2 2,349,589 + Dsui_2210 0.32 +0.5 2,349,702 + Dsui_2210 0.47 -0.4 2,349,703 + Dsui_2210 0.47 -0.1 2,349,862 + Dsui_2210 0.69 -0.1 2,349,977 + Dsui_2210 0.84 +0.2 2,349,987 + Dsui_2210 0.86 -0.0 2,350,081 + -0.7 2,350,088 + +0.2
Or see this region's nucleotide sequence