Strain Fitness in Dechlorosoma suillum PS around Dsui_2157

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2156 and Dsui_2157 are separated by 580 nucleotidesDsui_2157 and Dsui_2158 overlap by 20 nucleotidesDsui_2158 and Dsui_2159 are separated by 237 nucleotides Dsui_2156: Dsui_2156 - methyl-accepting chemotaxis protein, at 2,286,025 to 2,287,665 _2156 Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624 _2157 Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252 _2158 Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758 _2159 Position (kb) 2288 2289 2290 2291Strain fitness (log2 ratio) -2 -1 0 1 2at 2287.450 kb on - strand, within Dsui_2156at 2287.507 kb on - strandat 2287.567 kb on + strandat 2287.590 kb on + strandat 2287.597 kb on + strandat 2287.605 kb on - strandat 2287.605 kb on - strandat 2287.614 kb on + strandat 2287.717 kb on + strandat 2287.748 kb on - strandat 2287.748 kb on - strandat 2287.922 kb on + strandat 2287.922 kb on + strandat 2287.939 kb on + strandat 2287.974 kb on + strandat 2287.974 kb on + strandat 2288.003 kb on + strandat 2288.003 kb on + strandat 2288.011 kb on - strandat 2288.086 kb on - strandat 2288.287 kb on + strandat 2288.363 kb on - strandat 2288.368 kb on - strandat 2288.426 kb on + strandat 2288.764 kb on + strand, within Dsui_2157at 2288.823 kb on + strand, within Dsui_2157at 2288.873 kb on - strandat 2288.874 kb on + strandat 2288.962 kb on - strandat 2289.113 kb on + strand, within Dsui_2157at 2289.133 kb on + strand, within Dsui_2157at 2289.222 kb on - strand, within Dsui_2157at 2289.504 kb on - strandat 2289.809 kb on + strand, within Dsui_2157at 2289.939 kb on + strand, within Dsui_2157at 2289.979 kb on + strand, within Dsui_2157at 2290.039 kb on - strandat 2290.072 kb on - strand, within Dsui_2157at 2290.397 kb on + strandat 2290.582 kb on + strandat 2290.587 kb on + strandat 2290.587 kb on + strandat 2290.653 kb on + strandat 2290.697 kb on + strand, within Dsui_2158at 2290.761 kb on + strand, within Dsui_2158at 2290.770 kb on - strandat 2291.110 kb on + strandat 2291.332 kb on - strandat 2291.434 kb on + strandat 2291.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,287,450 - Dsui_2156 0.87 -1.0
2,287,507 - +0.7
2,287,567 + +0.7
2,287,590 + +0.3
2,287,597 + -0.1
2,287,605 - -0.5
2,287,605 - -0.1
2,287,614 + -0.6
2,287,717 + +0.7
2,287,748 - -0.9
2,287,748 - +0.2
2,287,922 + -0.9
2,287,922 + -0.7
2,287,939 + -0.8
2,287,974 + -0.5
2,287,974 + -0.9
2,288,003 + -0.4
2,288,003 + +0.3
2,288,011 - -0.3
2,288,086 - -0.8
2,288,287 + +0.1
2,288,363 - +2.3
2,288,368 - -0.0
2,288,426 + -1.0
2,288,764 + Dsui_2157 0.22 -0.6
2,288,823 + Dsui_2157 0.24 -0.1
2,288,873 - +1.3
2,288,874 + +1.0
2,288,962 - -0.3
2,289,113 + Dsui_2157 0.36 +0.3
2,289,133 + Dsui_2157 0.37 -0.4
2,289,222 - Dsui_2157 0.41 -0.0
2,289,504 - +1.3
2,289,809 + Dsui_2157 0.66 +1.1
2,289,939 + Dsui_2157 0.71 +0.5
2,289,979 + Dsui_2157 0.73 +1.1
2,290,039 - +0.3
2,290,072 - Dsui_2157 0.77 -1.0
2,290,397 + -0.3
2,290,582 + -0.9
2,290,587 + +0.3
2,290,587 + -0.5
2,290,653 + -0.1
2,290,697 + Dsui_2158 0.14 -1.8
2,290,761 + Dsui_2158 0.24 -1.3
2,290,770 - +2.3
2,291,110 + -0.3
2,291,332 - -2.3
2,291,434 + -1.1
2,291,613 + -1.0

Or see this region's nucleotide sequence