Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2156 and Dsui_2157 are separated by 580 nucleotides Dsui_2157 and Dsui_2158 overlap by 20 nucleotides Dsui_2158 and Dsui_2159 are separated by 237 nucleotides
Dsui_2156: Dsui_2156 - methyl-accepting chemotaxis protein, at 2,286,025 to 2,287,665
_2156
Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624
_2157
Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252
_2158
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Position (kb)
2288
2289
2290
2291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2287.450 kb on - strand, within Dsui_2156 at 2287.507 kb on - strand at 2287.567 kb on + strand at 2287.590 kb on + strand at 2287.597 kb on + strand at 2287.605 kb on - strand at 2287.605 kb on - strand at 2287.614 kb on + strand at 2287.717 kb on + strand at 2287.748 kb on - strand at 2287.748 kb on - strand at 2287.922 kb on + strand at 2287.922 kb on + strand at 2287.939 kb on + strand at 2287.974 kb on + strand at 2287.974 kb on + strand at 2288.003 kb on + strand at 2288.003 kb on + strand at 2288.011 kb on - strand at 2288.086 kb on - strand at 2288.287 kb on + strand at 2288.363 kb on - strand at 2288.368 kb on - strand at 2288.426 kb on + strand at 2288.764 kb on + strand, within Dsui_2157 at 2288.823 kb on + strand, within Dsui_2157 at 2288.873 kb on - strand at 2288.874 kb on + strand at 2288.962 kb on - strand at 2289.113 kb on + strand, within Dsui_2157 at 2289.133 kb on + strand, within Dsui_2157 at 2289.222 kb on - strand, within Dsui_2157 at 2289.504 kb on - strand at 2289.809 kb on + strand, within Dsui_2157 at 2289.939 kb on + strand, within Dsui_2157 at 2289.979 kb on + strand, within Dsui_2157 at 2290.039 kb on - strand at 2290.072 kb on - strand, within Dsui_2157 at 2290.397 kb on + strand at 2290.582 kb on + strand at 2290.587 kb on + strand at 2290.587 kb on + strand at 2290.653 kb on + strand at 2290.697 kb on + strand, within Dsui_2158 at 2290.761 kb on + strand, within Dsui_2158 at 2290.770 kb on - strand at 2291.110 kb on + strand at 2291.332 kb on - strand at 2291.434 kb on + strand at 2291.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,287,450 - Dsui_2156 0.87 -1.0 2,287,507 - +0.7 2,287,567 + +0.7 2,287,590 + +0.3 2,287,597 + -0.1 2,287,605 - -0.5 2,287,605 - -0.1 2,287,614 + -0.6 2,287,717 + +0.7 2,287,748 - -0.9 2,287,748 - +0.2 2,287,922 + -0.9 2,287,922 + -0.7 2,287,939 + -0.8 2,287,974 + -0.5 2,287,974 + -0.9 2,288,003 + -0.4 2,288,003 + +0.3 2,288,011 - -0.3 2,288,086 - -0.8 2,288,287 + +0.1 2,288,363 - +2.3 2,288,368 - -0.0 2,288,426 + -1.0 2,288,764 + Dsui_2157 0.22 -0.6 2,288,823 + Dsui_2157 0.24 -0.1 2,288,873 - +1.3 2,288,874 + +1.0 2,288,962 - -0.3 2,289,113 + Dsui_2157 0.36 +0.3 2,289,133 + Dsui_2157 0.37 -0.4 2,289,222 - Dsui_2157 0.41 -0.0 2,289,504 - +1.3 2,289,809 + Dsui_2157 0.66 +1.1 2,289,939 + Dsui_2157 0.71 +0.5 2,289,979 + Dsui_2157 0.73 +1.1 2,290,039 - +0.3 2,290,072 - Dsui_2157 0.77 -1.0 2,290,397 + -0.3 2,290,582 + -0.9 2,290,587 + +0.3 2,290,587 + -0.5 2,290,653 + -0.1 2,290,697 + Dsui_2158 0.14 -1.8 2,290,761 + Dsui_2158 0.24 -1.3 2,290,770 - +2.3 2,291,110 + -0.3 2,291,332 - -2.3 2,291,434 + -1.1 2,291,613 + -1.0
Or see this region's nucleotide sequence