Strain Fitness in Dechlorosoma suillum PS around Dsui_2061

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2059 and Dsui_2060 overlap by 1 nucleotidesDsui_2060 and Dsui_2061 are separated by 87 nucleotidesDsui_2061 and Dsui_2062 are separated by 504 nucleotides Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996 _2059 Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877 _2060 Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119 _2061 Dsui_2062: Dsui_2062 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 2,181,624 to 2,182,031 _2062 Position (kb) 2179 2180 2181 2182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2179.198 kb on + strand, within Dsui_2060at 2179.410 kb on - strand, within Dsui_2060at 2179.723 kb on + strand, within Dsui_2060at 2179.774 kb on + strand, within Dsui_2060at 2179.960 kb on + strandat 2179.996 kb on + strandat 2180.115 kb on - strand, within Dsui_2061at 2180.244 kb on - strand, within Dsui_2061at 2180.244 kb on - strand, within Dsui_2061at 2180.244 kb on - strand, within Dsui_2061at 2180.296 kb on - strand, within Dsui_2061at 2180.326 kb on + strand, within Dsui_2061at 2180.362 kb on - strand, within Dsui_2061at 2180.405 kb on + strand, within Dsui_2061at 2180.415 kb on - strand, within Dsui_2061at 2180.447 kb on + strandat 2180.457 kb on + strand, within Dsui_2061at 2180.479 kb on + strand, within Dsui_2061at 2180.487 kb on - strand, within Dsui_2061at 2180.498 kb on - strand, within Dsui_2061at 2180.819 kb on + strand, within Dsui_2061at 2180.827 kb on - strand, within Dsui_2061at 2180.827 kb on - strand, within Dsui_2061at 2181.239 kb on + strandat 2181.247 kb on - strandat 2181.271 kb on + strandat 2181.281 kb on + strandat 2181.303 kb on + strandat 2181.479 kb on + strandat 2181.479 kb on + strandat 2181.487 kb on - strandat 2181.501 kb on - strandat 2181.569 kb on - strandat 2181.709 kb on + strand, within Dsui_2062at 2181.709 kb on + strand, within Dsui_2062at 2181.782 kb on - strand, within Dsui_2062at 2181.785 kb on + strand, within Dsui_2062at 2181.826 kb on + strand, within Dsui_2062at 2181.850 kb on + strand, within Dsui_2062at 2181.875 kb on + strand, within Dsui_2062at 2181.921 kb on + strand, within Dsui_2062at 2181.921 kb on + strand, within Dsui_2062at 2181.983 kb on - strand, within Dsui_2062at 2182.011 kb on - strandat 2182.013 kb on + strandat 2182.021 kb on - strandat 2182.021 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
2,179,198 + Dsui_2060 0.23 +0.4
2,179,410 - Dsui_2060 0.47 +0.6
2,179,723 + Dsui_2060 0.82 +0.2
2,179,774 + Dsui_2060 0.88 -0.1
2,179,960 + +0.0
2,179,996 + -0.2
2,180,115 - Dsui_2061 0.13 +0.1
2,180,244 - Dsui_2061 0.24 -0.1
2,180,244 - Dsui_2061 0.24 +0.3
2,180,244 - Dsui_2061 0.24 +0.2
2,180,296 - Dsui_2061 0.29 +1.1
2,180,326 + Dsui_2061 0.31 -0.1
2,180,362 - Dsui_2061 0.34 -0.4
2,180,405 + Dsui_2061 0.38 -1.3
2,180,415 - Dsui_2061 0.39 -0.1
2,180,447 + +1.9
2,180,457 + Dsui_2061 0.43 -0.4
2,180,479 + Dsui_2061 0.45 -0.0
2,180,487 - Dsui_2061 0.45 -0.3
2,180,498 - Dsui_2061 0.46 +0.1
2,180,819 + Dsui_2061 0.74 -0.5
2,180,827 - Dsui_2061 0.75 -0.3
2,180,827 - Dsui_2061 0.75 +0.1
2,181,239 + +0.0
2,181,247 - -1.1
2,181,271 + -1.3
2,181,281 + +0.0
2,181,303 + -1.6
2,181,479 + -0.3
2,181,479 + +0.7
2,181,487 - -0.7
2,181,501 - +2.3
2,181,569 - +0.0
2,181,709 + Dsui_2062 0.21 +0.3
2,181,709 + Dsui_2062 0.21 -0.4
2,181,782 - Dsui_2062 0.39 -1.0
2,181,785 + Dsui_2062 0.39 -0.3
2,181,826 + Dsui_2062 0.50 -1.0
2,181,850 + Dsui_2062 0.55 -0.0
2,181,875 + Dsui_2062 0.62 +1.2
2,181,921 + Dsui_2062 0.73 +1.5
2,181,921 + Dsui_2062 0.73 +0.2
2,181,983 - Dsui_2062 0.88 -2.8
2,182,011 - -0.1
2,182,013 + -0.8
2,182,021 - -0.2
2,182,021 - -0.4

Or see this region's nucleotide sequence