Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2059 and Dsui_2060 overlap by 1 nucleotides Dsui_2060 and Dsui_2061 are separated by 87 nucleotides Dsui_2061 and Dsui_2062 are separated by 504 nucleotides
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119
_2061
Dsui_2062: Dsui_2062 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 2,181,624 to 2,182,031
_2062
Position (kb)
2179
2180
2181
2182 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2179.198 kb on + strand, within Dsui_2060 at 2179.410 kb on - strand, within Dsui_2060 at 2179.723 kb on + strand, within Dsui_2060 at 2179.774 kb on + strand, within Dsui_2060 at 2179.960 kb on + strand at 2179.996 kb on + strand at 2180.115 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.244 kb on - strand, within Dsui_2061 at 2180.296 kb on - strand, within Dsui_2061 at 2180.326 kb on + strand, within Dsui_2061 at 2180.362 kb on - strand, within Dsui_2061 at 2180.405 kb on + strand, within Dsui_2061 at 2180.415 kb on - strand, within Dsui_2061 at 2180.447 kb on + strand at 2180.457 kb on + strand, within Dsui_2061 at 2180.479 kb on + strand, within Dsui_2061 at 2180.487 kb on - strand, within Dsui_2061 at 2180.498 kb on - strand, within Dsui_2061 at 2180.819 kb on + strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2180.827 kb on - strand, within Dsui_2061 at 2181.239 kb on + strand at 2181.247 kb on - strand at 2181.271 kb on + strand at 2181.281 kb on + strand at 2181.303 kb on + strand at 2181.479 kb on + strand at 2181.479 kb on + strand at 2181.487 kb on - strand at 2181.501 kb on - strand at 2181.569 kb on - strand at 2181.709 kb on + strand, within Dsui_2062 at 2181.709 kb on + strand, within Dsui_2062 at 2181.782 kb on - strand, within Dsui_2062 at 2181.785 kb on + strand, within Dsui_2062 at 2181.826 kb on + strand, within Dsui_2062 at 2181.850 kb on + strand, within Dsui_2062 at 2181.875 kb on + strand, within Dsui_2062 at 2181.921 kb on + strand, within Dsui_2062 at 2181.921 kb on + strand, within Dsui_2062 at 2181.983 kb on - strand, within Dsui_2062 at 2182.011 kb on - strand at 2182.013 kb on + strand at 2182.021 kb on - strand at 2182.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,179,198 + Dsui_2060 0.23 +0.4 2,179,410 - Dsui_2060 0.47 +0.6 2,179,723 + Dsui_2060 0.82 +0.2 2,179,774 + Dsui_2060 0.88 -0.1 2,179,960 + +0.0 2,179,996 + -0.2 2,180,115 - Dsui_2061 0.13 +0.1 2,180,244 - Dsui_2061 0.24 -0.1 2,180,244 - Dsui_2061 0.24 +0.3 2,180,244 - Dsui_2061 0.24 +0.2 2,180,296 - Dsui_2061 0.29 +1.1 2,180,326 + Dsui_2061 0.31 -0.1 2,180,362 - Dsui_2061 0.34 -0.4 2,180,405 + Dsui_2061 0.38 -1.3 2,180,415 - Dsui_2061 0.39 -0.1 2,180,447 + +1.9 2,180,457 + Dsui_2061 0.43 -0.4 2,180,479 + Dsui_2061 0.45 -0.0 2,180,487 - Dsui_2061 0.45 -0.3 2,180,498 - Dsui_2061 0.46 +0.1 2,180,819 + Dsui_2061 0.74 -0.5 2,180,827 - Dsui_2061 0.75 -0.3 2,180,827 - Dsui_2061 0.75 +0.1 2,181,239 + +0.0 2,181,247 - -1.1 2,181,271 + -1.3 2,181,281 + +0.0 2,181,303 + -1.6 2,181,479 + -0.3 2,181,479 + +0.7 2,181,487 - -0.7 2,181,501 - +2.3 2,181,569 - +0.0 2,181,709 + Dsui_2062 0.21 +0.3 2,181,709 + Dsui_2062 0.21 -0.4 2,181,782 - Dsui_2062 0.39 -1.0 2,181,785 + Dsui_2062 0.39 -0.3 2,181,826 + Dsui_2062 0.50 -1.0 2,181,850 + Dsui_2062 0.55 -0.0 2,181,875 + Dsui_2062 0.62 +1.2 2,181,921 + Dsui_2062 0.73 +1.5 2,181,921 + Dsui_2062 0.73 +0.2 2,181,983 - Dsui_2062 0.88 -2.8 2,182,011 - -0.1 2,182,013 + -0.8 2,182,021 - -0.2 2,182,021 - -0.4
Or see this region's nucleotide sequence