Strain Fitness in Dechlorosoma suillum PS around Dsui_2058

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2057 and Dsui_2058 overlap by 1 nucleotidesDsui_2058 and Dsui_2059 overlap by 4 nucleotidesDsui_2059 and Dsui_2060 overlap by 1 nucleotides Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354 _2057 Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136 _2058 Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996 _2059 Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877 _2060 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -1 0 1at 2176.363 kb on + strandat 2176.667 kb on + strandat 2176.807 kb on + strand, within Dsui_2057at 2176.891 kb on - strand, within Dsui_2057at 2176.970 kb on + strand, within Dsui_2057at 2176.978 kb on - strand, within Dsui_2057at 2177.188 kb on + strandat 2177.196 kb on - strand, within Dsui_2057at 2177.196 kb on - strand, within Dsui_2057at 2177.231 kb on - strand, within Dsui_2057at 2177.299 kb on + strandat 2177.483 kb on - strand, within Dsui_2058at 2177.519 kb on - strand, within Dsui_2058at 2177.700 kb on - strand, within Dsui_2058at 2177.905 kb on + strand, within Dsui_2058at 2178.017 kb on - strand, within Dsui_2058at 2178.144 kb on - strandat 2178.146 kb on + strandat 2178.200 kb on + strandat 2178.299 kb on - strand, within Dsui_2059at 2178.299 kb on - strand, within Dsui_2059at 2178.334 kb on + strand, within Dsui_2059at 2178.707 kb on - strand, within Dsui_2059at 2178.728 kb on - strand, within Dsui_2059at 2178.883 kb on + strand, within Dsui_2059

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,176,363 + +0.1
2,176,667 + +1.6
2,176,807 + Dsui_2057 0.23 +0.7
2,176,891 - Dsui_2057 0.35 +1.2
2,176,970 + Dsui_2057 0.46 -0.4
2,176,978 - Dsui_2057 0.47 +0.2
2,177,188 + +1.3
2,177,196 - Dsui_2057 0.78 +0.0
2,177,196 - Dsui_2057 0.78 -0.1
2,177,231 - Dsui_2057 0.83 +0.7
2,177,299 + +0.9
2,177,483 - Dsui_2058 0.16 +0.4
2,177,519 - Dsui_2058 0.21 +0.8
2,177,700 - Dsui_2058 0.44 -0.5
2,177,905 + Dsui_2058 0.70 -0.2
2,178,017 - Dsui_2058 0.85 -0.0
2,178,144 - +0.8
2,178,146 + -1.3
2,178,200 + -0.3
2,178,299 - Dsui_2059 0.19 +0.2
2,178,299 - Dsui_2059 0.19 -0.1
2,178,334 + Dsui_2059 0.23 +1.0
2,178,707 - Dsui_2059 0.66 -0.2
2,178,728 - Dsui_2059 0.69 -0.0
2,178,883 + Dsui_2059 0.87 -0.8

Or see this region's nucleotide sequence