Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2057 and Dsui_2058 overlap by 1 nucleotides Dsui_2058 and Dsui_2059 overlap by 4 nucleotides Dsui_2059 and Dsui_2060 overlap by 1 nucleotides
Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354
_2057
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-1
0
1 at 2176.363 kb on + strand at 2176.667 kb on + strand at 2176.807 kb on + strand, within Dsui_2057 at 2176.891 kb on - strand, within Dsui_2057 at 2176.970 kb on + strand, within Dsui_2057 at 2176.978 kb on - strand, within Dsui_2057 at 2177.188 kb on + strand at 2177.196 kb on - strand, within Dsui_2057 at 2177.196 kb on - strand, within Dsui_2057 at 2177.231 kb on - strand, within Dsui_2057 at 2177.299 kb on + strand at 2177.483 kb on - strand, within Dsui_2058 at 2177.519 kb on - strand, within Dsui_2058 at 2177.700 kb on - strand, within Dsui_2058 at 2177.905 kb on + strand, within Dsui_2058 at 2178.017 kb on - strand, within Dsui_2058 at 2178.144 kb on - strand at 2178.146 kb on + strand at 2178.200 kb on + strand at 2178.299 kb on - strand, within Dsui_2059 at 2178.299 kb on - strand, within Dsui_2059 at 2178.334 kb on + strand, within Dsui_2059 at 2178.707 kb on - strand, within Dsui_2059 at 2178.728 kb on - strand, within Dsui_2059 at 2178.883 kb on + strand, within Dsui_2059
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,176,363 + +0.1 2,176,667 + +1.6 2,176,807 + Dsui_2057 0.23 +0.7 2,176,891 - Dsui_2057 0.35 +1.2 2,176,970 + Dsui_2057 0.46 -0.4 2,176,978 - Dsui_2057 0.47 +0.2 2,177,188 + +1.3 2,177,196 - Dsui_2057 0.78 +0.0 2,177,196 - Dsui_2057 0.78 -0.1 2,177,231 - Dsui_2057 0.83 +0.7 2,177,299 + +0.9 2,177,483 - Dsui_2058 0.16 +0.4 2,177,519 - Dsui_2058 0.21 +0.8 2,177,700 - Dsui_2058 0.44 -0.5 2,177,905 + Dsui_2058 0.70 -0.2 2,178,017 - Dsui_2058 0.85 -0.0 2,178,144 - +0.8 2,178,146 + -1.3 2,178,200 + -0.3 2,178,299 - Dsui_2059 0.19 +0.2 2,178,299 - Dsui_2059 0.19 -0.1 2,178,334 + Dsui_2059 0.23 +1.0 2,178,707 - Dsui_2059 0.66 -0.2 2,178,728 - Dsui_2059 0.69 -0.0 2,178,883 + Dsui_2059 0.87 -0.8
Or see this region's nucleotide sequence