Strain Fitness in Dechlorosoma suillum PS around Dsui_1934

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1933 and Dsui_1934 overlap by 8 nucleotidesDsui_1934 and Dsui_1935 are separated by 79 nucleotidesDsui_1935 and Dsui_1936 are separated by 82 nucleotides Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638 _1933 Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329 _1934 Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047 _1935 Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464 _1936 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -1 0 1 2at 2042.893 kb on - strandat 2042.895 kb on + strandat 2042.928 kb on - strandat 2042.935 kb on - strandat 2042.947 kb on + strandat 2043.048 kb on - strand, within Dsui_1933at 2043.061 kb on + strand, within Dsui_1933at 2043.103 kb on + strandat 2043.146 kb on + strandat 2043.146 kb on + strand, within Dsui_1933at 2043.174 kb on - strand, within Dsui_1933at 2043.256 kb on + strand, within Dsui_1933at 2043.380 kb on + strand, within Dsui_1933at 2043.388 kb on - strand, within Dsui_1933at 2043.406 kb on + strand, within Dsui_1933at 2043.419 kb on - strand, within Dsui_1933at 2043.444 kb on + strand, within Dsui_1933at 2043.504 kb on + strand, within Dsui_1933at 2043.505 kb on + strand, within Dsui_1933at 2043.520 kb on - strand, within Dsui_1933at 2043.522 kb on + strand, within Dsui_1933at 2043.530 kb on - strand, within Dsui_1933at 2043.572 kb on - strand, within Dsui_1933at 2043.574 kb on + strandat 2043.618 kb on + strandat 2043.647 kb on + strandat 2043.647 kb on + strandat 2044.348 kb on - strandat 2044.355 kb on - strandat 2044.370 kb on - strandat 2045.060 kb on - strandat 2045.196 kb on - strandat 2045.204 kb on - strandat 2045.230 kb on + strandat 2045.230 kb on + strandat 2045.238 kb on - strandat 2045.238 kb on - strandat 2045.257 kb on - strandat 2045.293 kb on - strand, within Dsui_1936at 2045.326 kb on + strand, within Dsui_1936

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,042,893 - -1.1
2,042,895 + -1.4
2,042,928 - +0.0
2,042,935 - +0.1
2,042,947 + -0.2
2,043,048 - Dsui_1933 0.10 -0.4
2,043,061 + Dsui_1933 0.12 -0.9
2,043,103 + +2.3
2,043,146 + +0.7
2,043,146 + Dsui_1933 0.25 -0.6
2,043,174 - Dsui_1933 0.30 -0.7
2,043,256 + Dsui_1933 0.42 +2.3
2,043,380 + Dsui_1933 0.61 -1.5
2,043,388 - Dsui_1933 0.62 +0.9
2,043,406 + Dsui_1933 0.65 +0.3
2,043,419 - Dsui_1933 0.67 -0.4
2,043,444 + Dsui_1933 0.70 -0.8
2,043,504 + Dsui_1933 0.80 +0.3
2,043,505 + Dsui_1933 0.80 +0.2
2,043,520 - Dsui_1933 0.82 -0.0
2,043,522 + Dsui_1933 0.82 -1.2
2,043,530 - Dsui_1933 0.83 -0.1
2,043,572 - Dsui_1933 0.90 -0.9
2,043,574 + +0.7
2,043,618 + +0.7
2,043,647 + -1.0
2,043,647 + -0.4
2,044,348 - -0.1
2,044,355 - +0.4
2,044,370 - -0.2
2,045,060 - +0.7
2,045,196 - +0.6
2,045,204 - +0.4
2,045,230 + -0.5
2,045,230 + +0.3
2,045,238 - +0.1
2,045,238 - +0.1
2,045,257 - -0.2
2,045,293 - Dsui_1936 0.12 +0.7
2,045,326 + Dsui_1936 0.15 -0.6

Or see this region's nucleotide sequence