Strain Fitness in Dechlorosoma suillum PS around Dsui_1932

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1930 and Dsui_1931 overlap by 8 nucleotidesDsui_1931 and Dsui_1932 are separated by 166 nucleotidesDsui_1932 and Dsui_1933 are separated by 487 nucleotides Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322 _1930 Dsui_1931: Dsui_1931 - transcriptional regulator, at 2,041,315 to 2,041,821 _1931 Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491 _1932 Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638 _1933 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2040.994 kb on - strand, within Dsui_1930at 2041.018 kb on - strand, within Dsui_1930at 2041.042 kb on - strand, within Dsui_1930at 2041.253 kb on - strandat 2041.278 kb on + strandat 2041.297 kb on + strandat 2041.317 kb on + strandat 2041.527 kb on + strand, within Dsui_1931at 2041.553 kb on - strandat 2041.579 kb on - strandat 2041.637 kb on - strandat 2041.651 kb on + strand, within Dsui_1931at 2041.659 kb on - strand, within Dsui_1931at 2041.663 kb on + strand, within Dsui_1931at 2041.765 kb on + strand, within Dsui_1931at 2041.773 kb on - strandat 2041.773 kb on - strandat 2041.786 kb on + strandat 2041.796 kb on - strandat 2041.825 kb on - strandat 2041.831 kb on - strandat 2041.914 kb on - strandat 2041.919 kb on - strandat 2041.958 kb on - strandat 2042.187 kb on - strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.406 kb on - strand, within Dsui_1932at 2042.502 kb on - strandat 2042.512 kb on - strandat 2042.545 kb on - strandat 2042.570 kb on + strandat 2042.570 kb on + strandat 2042.578 kb on - strandat 2042.893 kb on - strandat 2042.895 kb on + strandat 2042.928 kb on - strandat 2042.935 kb on - strandat 2042.947 kb on + strandat 2043.048 kb on - strand, within Dsui_1933at 2043.061 kb on + strand, within Dsui_1933at 2043.103 kb on + strandat 2043.146 kb on + strandat 2043.146 kb on + strand, within Dsui_1933at 2043.174 kb on - strand, within Dsui_1933at 2043.256 kb on + strand, within Dsui_1933at 2043.380 kb on + strand, within Dsui_1933at 2043.388 kb on - strand, within Dsui_1933at 2043.406 kb on + strand, within Dsui_1933at 2043.419 kb on - strand, within Dsui_1933at 2043.444 kb on + strand, within Dsui_1933

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,040,994 - Dsui_1930 0.68 +0.3
2,041,018 - Dsui_1930 0.70 -1.0
2,041,042 - Dsui_1930 0.73 +0.7
2,041,253 - +0.7
2,041,278 + -0.5
2,041,297 + -0.2
2,041,317 + -0.5
2,041,527 + Dsui_1931 0.42 -2.4
2,041,553 - +2.3
2,041,579 - -0.3
2,041,637 - +0.7
2,041,651 + Dsui_1931 0.66 -1.7
2,041,659 - Dsui_1931 0.68 -1.1
2,041,663 + Dsui_1931 0.69 -3.0
2,041,765 + Dsui_1931 0.89 -1.4
2,041,773 - -0.7
2,041,773 - -0.3
2,041,786 + -1.7
2,041,796 - -1.6
2,041,825 - -1.4
2,041,831 - -0.0
2,041,914 - -1.4
2,041,919 - +0.3
2,041,958 - -1.0
2,042,187 - Dsui_1932 0.39 -1.4
2,042,214 + Dsui_1932 0.45 -1.6
2,042,214 + Dsui_1932 0.45 -2.0
2,042,406 - Dsui_1932 0.83 -2.6
2,042,406 - Dsui_1932 0.83 -1.3
2,042,406 - Dsui_1932 0.83 -1.5
2,042,502 - -0.1
2,042,512 - -0.1
2,042,545 - -0.2
2,042,570 + -0.0
2,042,570 + -1.1
2,042,578 - -1.0
2,042,893 - -1.1
2,042,895 + -1.4
2,042,928 - +0.0
2,042,935 - +0.1
2,042,947 + -0.2
2,043,048 - Dsui_1933 0.10 -0.4
2,043,061 + Dsui_1933 0.12 -0.9
2,043,103 + +2.3
2,043,146 + +0.7
2,043,146 + Dsui_1933 0.25 -0.6
2,043,174 - Dsui_1933 0.30 -0.7
2,043,256 + Dsui_1933 0.42 +2.3
2,043,380 + Dsui_1933 0.61 -1.5
2,043,388 - Dsui_1933 0.62 +0.9
2,043,406 + Dsui_1933 0.65 +0.3
2,043,419 - Dsui_1933 0.67 -0.4
2,043,444 + Dsui_1933 0.70 -0.8

Or see this region's nucleotide sequence