Strain Fitness in Dechlorosoma suillum PS around Dsui_1930

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1929 and Dsui_1930 are separated by 14 nucleotidesDsui_1930 and Dsui_1931 overlap by 8 nucleotidesDsui_1931 and Dsui_1932 are separated by 166 nucleotides Dsui_1929: Dsui_1929 - Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein, at 2,039,086 to 2,040,279 _1929 Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322 _1930 Dsui_1931: Dsui_1931 - transcriptional regulator, at 2,041,315 to 2,041,821 _1931 Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491 _1932 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2039.312 kb on + strand, within Dsui_1929at 2039.322 kb on + strand, within Dsui_1929at 2039.353 kb on + strand, within Dsui_1929at 2039.451 kb on + strand, within Dsui_1929at 2039.480 kb on + strand, within Dsui_1929at 2039.504 kb on + strand, within Dsui_1929at 2039.837 kb on - strand, within Dsui_1929at 2039.839 kb on + strand, within Dsui_1929at 2039.862 kb on + strand, within Dsui_1929at 2039.962 kb on + strand, within Dsui_1929at 2040.073 kb on - strand, within Dsui_1929at 2040.143 kb on - strand, within Dsui_1929at 2040.202 kb on + strandat 2040.209 kb on - strandat 2040.236 kb on - strandat 2040.323 kb on + strandat 2040.348 kb on + strandat 2040.438 kb on - strand, within Dsui_1930at 2040.527 kb on + strand, within Dsui_1930at 2040.565 kb on + strand, within Dsui_1930at 2040.570 kb on + strand, within Dsui_1930at 2040.595 kb on + strand, within Dsui_1930at 2040.601 kb on - strand, within Dsui_1930at 2040.793 kb on + strand, within Dsui_1930at 2040.803 kb on + strand, within Dsui_1930at 2040.816 kb on - strandat 2040.905 kb on - strandat 2040.905 kb on - strandat 2040.936 kb on + strand, within Dsui_1930at 2040.986 kb on + strand, within Dsui_1930at 2040.994 kb on - strand, within Dsui_1930at 2041.018 kb on - strand, within Dsui_1930at 2041.042 kb on - strand, within Dsui_1930at 2041.253 kb on - strandat 2041.278 kb on + strandat 2041.297 kb on + strandat 2041.317 kb on + strandat 2041.527 kb on + strand, within Dsui_1931at 2041.553 kb on - strandat 2041.579 kb on - strandat 2041.637 kb on - strandat 2041.651 kb on + strand, within Dsui_1931at 2041.659 kb on - strand, within Dsui_1931at 2041.663 kb on + strand, within Dsui_1931at 2041.765 kb on + strand, within Dsui_1931at 2041.773 kb on - strandat 2041.773 kb on - strandat 2041.786 kb on + strandat 2041.796 kb on - strandat 2041.825 kb on - strandat 2041.831 kb on - strandat 2041.914 kb on - strandat 2041.919 kb on - strandat 2041.958 kb on - strandat 2042.187 kb on - strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932at 2042.214 kb on + strand, within Dsui_1932

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,039,312 + Dsui_1929 0.19 -2.6
2,039,322 + Dsui_1929 0.20 -1.2
2,039,353 + Dsui_1929 0.22 -2.2
2,039,451 + Dsui_1929 0.31 -2.0
2,039,480 + Dsui_1929 0.33 -0.6
2,039,504 + Dsui_1929 0.35 -0.5
2,039,837 - Dsui_1929 0.63 -2.6
2,039,839 + Dsui_1929 0.63 -2.2
2,039,862 + Dsui_1929 0.65 -3.4
2,039,962 + Dsui_1929 0.73 -1.9
2,040,073 - Dsui_1929 0.83 -0.8
2,040,143 - Dsui_1929 0.89 -0.9
2,040,202 + -2.2
2,040,209 - -2.5
2,040,236 - -1.5
2,040,323 + -3.3
2,040,348 + -1.2
2,040,438 - Dsui_1930 0.14 -1.8
2,040,527 + Dsui_1930 0.23 -2.3
2,040,565 + Dsui_1930 0.26 -1.7
2,040,570 + Dsui_1930 0.27 -1.7
2,040,595 + Dsui_1930 0.29 -2.5
2,040,601 - Dsui_1930 0.30 -3.1
2,040,793 + Dsui_1930 0.48 -1.4
2,040,803 + Dsui_1930 0.49 -3.2
2,040,816 - +1.3
2,040,905 - +2.3
2,040,905 - +3.3
2,040,936 + Dsui_1930 0.62 -1.2
2,040,986 + Dsui_1930 0.67 -3.3
2,040,994 - Dsui_1930 0.68 +0.3
2,041,018 - Dsui_1930 0.70 -1.0
2,041,042 - Dsui_1930 0.73 +0.7
2,041,253 - +0.7
2,041,278 + -0.5
2,041,297 + -0.2
2,041,317 + -0.5
2,041,527 + Dsui_1931 0.42 -2.4
2,041,553 - +2.3
2,041,579 - -0.3
2,041,637 - +0.7
2,041,651 + Dsui_1931 0.66 -1.7
2,041,659 - Dsui_1931 0.68 -1.1
2,041,663 + Dsui_1931 0.69 -3.0
2,041,765 + Dsui_1931 0.89 -1.4
2,041,773 - -0.7
2,041,773 - -0.3
2,041,786 + -1.7
2,041,796 - -1.6
2,041,825 - -1.4
2,041,831 - -0.0
2,041,914 - -1.4
2,041,919 - +0.3
2,041,958 - -1.0
2,042,187 - Dsui_1932 0.39 -1.4
2,042,214 + Dsui_1932 0.45 -1.6
2,042,214 + Dsui_1932 0.45 -2.0

Or see this region's nucleotide sequence